PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr038567.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 463aa MW: 51381 Da PI: 6.6775

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038567.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134	1e-41	26	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdee+++ yL kkv ++++e+ +i e+d++k+ePwdLp ++ky+tg r+nrat+sgyWkatgkdke+++k Pbr038567.1 26 LPPGFRFHPTDEEIITSYLIKKVINSRFEA-AAIGEADLNKCEPWDLP----------------NRKYPTGMRTNRATESGYWKATGKDKEIFNKikk 106 79************************99.88**********9................589***********************9764 PP NAM 96 kgel............vglkktLvfykgrapkgektdWvmheyrl 128 + + vg+kktLvfy+grapkgekt+Wvmheyrl Pbr038567.1 107 Q--QqqggkgagggclVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 149 1..2467788888888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-51	19	176	IPR003441	NAC domain
PROSITE profile	PS51005	46.189	26	175	IPR003441	NAC domain
Pfam	PF02365	6.6E-24	27	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SRFEAAAIGE 60 ADLNKCEPWD LPNRKYPTGM RTNRATESGY WKATGKDKEI FNKIKKQQQQ GGKGAGGGCL 120 VGMKKTLVFY RGRAPKGEKT NWVMHEYRLD GKIPPYNYLS KAAKDEWVVC RVFHKNMGLK 180 KTLSPTRMNS FGNIGDHDLL DCSSLPPLMD PTLDTSNIMT NKHSSGHGDN DFKPDPIITV 240 APPSDHHGIS TNSYLNYFSV GGGGGVQALK QSYNFQLHPT SNYDSHQASS LSNPSNMLYP 300 PPLYHYHQHH QFQNPSSFSN FQPNQMMSNS DYFQQGMMRG AQGQGSVFRT SISTSSDHDD 360 DDQAIPRAIA KDNNKNKMKN NIETSSSGLG GGSDRQCKVE QFSTNQSMFS LSQDTELSTD 420 MNTNEISSSF VSKQELGSTN NSSYDQDPSV VPLSDIEDLW DF*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SRFEAAAIGE  60
ADLNKCEPWD LPNRKYPTGM RTNRATESGY WKATGKDKEI FNKIKKQQQQ GGKGAGGGCL  120
VGMKKTLVFY RGRAPKGEKT NWVMHEYRLD GKIPPYNYLS KAAKDEWVVC RVFHKNMGLK  180
KTLSPTRMNS FGNIGDHDLL DCSSLPPLMD PTLDTSNIMT NKHSSGHGDN DFKPDPIITV  240
APPSDHHGIS TNSYLNYFSV GGGGGVQALK QSYNFQLHPT SNYDSHQASS LSNPSNMLYP  300
PPLYHYHQHH QFQNPSSFSN FQPNQMMSNS DYFQQGMMRG AQGQGSVFRT SISTSSDHDD  360
DDQAIPRAIA KDNNKNKMKN NIETSSSGLG GGSDRQCKVE QFSTNQSMFS LSQDTELSTD  420
MNTNEISSSF VSKQELGSTN NSSYDQDPSV VPLSDIEDLW DF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-39	26	181	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-39	26	181	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-39	26	181	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-39	26	181	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-39	26	181	20	174	NAC domain-containing protein 19
3swm_B	4e-39	26	181	20	174	NAC domain-containing protein 19
3swm_C	4e-39	26	181	20	174	NAC domain-containing protein 19
3swm_D	4e-39	26	181	20	174	NAC domain-containing protein 19
3swp_A	4e-39	26	181	20	174	NAC domain-containing protein 19
3swp_B	4e-39	26	181	20	174	NAC domain-containing protein 19
3swp_C	4e-39	26	181	20	174	NAC domain-containing protein 19
3swp_D	4e-39	26	181	20	174	NAC domain-containing protein 19
4dul_A	3e-39	26	181	17	171	NAC domain-containing protein 19
4dul_B	3e-39	26	181	17	171	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	117	GGKGAGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038567.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198125	0.0	KF198125.1 Malus hupehensis NAC domain protein (NAC112) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009345061.1	0.0	PREDICTED: NAC domain-containing protein 79-like
Swissprot	Q9FK44	4e-89	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A498IFB4	0.0	A0A498IFB4_MALDO; Uncharacterized protein
STRING	XP_009345061.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	5e-82	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]