PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr038436.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 355aa MW: 40193.1 Da PI: 6.9005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr038436.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.8	2.9e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp k+k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdke+++ ++ Pbr038436.1 16 LPPGFRFHPTDEELLSHYLSPKVLDNFFCA-RAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVKDRKYPTGLRTNRATEAGYWKATGKDKEIYK-AKT 111 79**********************9888.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkg+kt+Wvmheyrle Pbr038436.1 112 LVGMKKTLVFYTGRAPKGVKTNWVMHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.207	16	166	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MENTSGFIME DEKMELPPGF RFHPTDEELL SHYLSPKVLD NFFCARAIGE VDLNKCEPWD 60 LPWKAKMGEK EWYFFCVKDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYTGRAPKGV KTNWVMHEYR LEGESSTHNL PKTAKNEWVI CRIFQKSSGG KKTHISGLLR 180 PSPFGNELRS SLLPPLMDSP AYNSDARTTA TACETSHVSC FSDPAEDQKT EDDIMDSFNN 240 SYNHQHHHHH NNIHFASSSR SNPSAHLNSF YSNQIPPNVG LLHHQNLVLM QNPSLLTMLV 300 ENHAPNLRHS AKIEFSPDTG LSIDASSVVS NREMVQDDPS YSSAPIELDG LWNY*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MENTSGFIME DEKMELPPGF RFHPTDEELL SHYLSPKVLD NFFCARAIGE VDLNKCEPWD  60
LPWKAKMGEK EWYFFCVKDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV  120
FYTGRAPKGV KTNWVMHEYR LEGESSTHNL PKTAKNEWVI CRIFQKSSGG KKTHISGLLR  180
PSPFGNELRS SLLPPLMDSP AYNSDARTTA TACETSHVSC FSDPAEDQKT EDDIMDSFNN  240
SYNHQHHHHH NNIHFASSSR SNPSAHLNSF YSNQIPPNVG LLHHQNLVLM QNPSLLTMLV  300
ENHAPNLRHS AKIEFSPDTG LSIDASSVVS NREMVQDDPS YSSAPIELDG LWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	8e-56	13	172	14	171	NAC domain-containing protein 19
4dul_B	8e-56	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr038436.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ177423	0.0	FJ177423.1 Malus x domestica NAC domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009360607.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-126	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2D3HXD3	0.0	A0A2D3HXD3_9ROSA; NAC protein
STRING	XP_009360607.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-127	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]