PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038354.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 540aa    MW: 60547.4 Da    PI: 7.9394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038354.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054116135221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C+ Cgk F++   L +H r
  Pbr038354.1 116 SCEVCGKGFKTLRALATHSR 135
                  6*****************65 PP
2zf-C2H211.10.0012380402123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC  C+k+F +   L  H+r+H
  Pbr038354.1 380 HKCRLCNKVFGTYQALGGHQRVH 402
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.263330IPR007087Zinc finger, C2H2
SuperFamilySSF576677.14E-5330No hitNo description
SMARTSM003552.3325IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-6325IPR007087Zinc finger, C2H2
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
SuperFamilySSF576674.69E-884137No hitNo description
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.74184111IPR007087Zinc finger, C2H2
SMARTSM003550.1284106IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-485108IPR007087Zinc finger, C2H2
SMARTSM003550.033115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993115138IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139126.7E-4117139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-8379402No hitNo description
PROSITE profilePS5015710.866380407IPR007087Zinc finger, C2H2
SMARTSM003550.011380402IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-8380404IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-8453480No hitNo description
PROSITE profilePS5015710.72458485IPR007087Zinc finger, C2H2
SMARTSM003550.14458480IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-9458480IPR007087Zinc finger, C2H2
PROSITE patternPS000280460480IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEHVCKHCKK SFLSGRVLGG HMRCHGAKKS AKTEKNIEMC RAHSEVEDDD HAGYGLRVNP  60
KKSWKFSGHS KFEASAGEEK EIVCRCRVCG KGFDSMRAMF GHMRHHSGRE RKETQSCEVC  120
GKGFKTLRAL ATHSRCHSKS IRGTDGLETV SSSKKLSVDC CQYSSETMGL IRRKRSKRLR  180
YKITNSSCSF SSFSVNESKY VAEFGEEVVE GAICLMIISG CGSNWGRISS VTESSDNNSL  240
SLEVQSPGLK NWIMGNKGGV SVCDDTVKLV DCISDCKNVS VEKKVFEFSE NNSGFANDEV  300
KNVEMEDRFF RGVGYKRRRL DEESVFGLRD TEMEMNVDII EEVESDVAAF RSMKSGLNNK  360
PKLYATESEV FADSQKKREH KCRLCNKVFG TYQALGGHQR VHKSTNTTSV VNIEDYEDGI  420
PTNKFSKMEY SCKLAKTECS DSSAAEEEME RVIENKGHKC SICLKVFATG QALGGHKRVH  480
FGKYHETGAE ESRVLKQQIS DICDAFDLSR PIENGDVDFK SWWPGNEHKQ ELLMDLMPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315319KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038354.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360635.10.0PREDICTED: zinc finger protein 667-like
TrEMBLA0A498HIL20.0A0A498HIL2_MALDO; Uncharacterized protein
STRINGXP_009360635.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-14zinc-finger protein 2