PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 38163.1 Da PI: 7.4961 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.1 | 1.2e-55 | 16 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL kkv +++++ ++i+evd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ + Pbr038276.1 16 LPPGFRFHPTDEELITYYLLKKVLDSSFTG-RAIAEVDLNKCEPWELPDKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTC 112 79*************************999.89***************99999****************************************97455 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +lvg+kktLvfy+grapkgek++Wvmheyrle Pbr038276.1 113 ALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 144 67****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-63 | 12 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.107 | 16 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-29 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDIMSFSTQF DHNTHLPPGF RFHPTDEELI TYYLLKKVLD SSFTGRAIAE VDLNKCEPWE 60 LPDKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT GKDREIYSSK TCALVGMKKT 120 LVFYRGRAPK GEKSNWVMHE YRLEGKFAYH YLSRSSKDEW VISRVFQKSS GSAATGPGSK 180 KIRMGNGSTS SVSLCPEPSS PSSVSLPPLL DSSPYQPVSA AGDGCSYDSP IPMEHVSCFS 240 TNPSNNGFNL PASCFDLAHP PPPQPPNFGG VSAFPSLRSL QENLQLPLFF SPMPAHPPVH 300 VGSSVAGGGS SVDFTGNWPP VSEEVRAVGP TELDCMWNYF KTECL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 16 | 172 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 16 | 172 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 16 | 172 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 16 | 172 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 16 | 172 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 16 | 172 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 16 | 172 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038276.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340641.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | O04017 | 1e-114 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A498IHX5 | 0.0 | A0A498IHX5_MALDO; Uncharacterized protein | ||||
STRING | XP_009340641.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3689 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-107 | NAC family protein |