PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037384.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 540aa    MW: 60845.5 Da    PI: 7.1348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037384.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-073774161155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   RR++i +++ +L+el+P++      K +Ka +L + +eY++ Lq
  Pbr037384.1 377 LRREKIADRMKKLQELVPNS-----NKADKAYMLDEIIEYVRLLQ 416
                  6******************7.....5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.3E-4119187IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.3E-15125205No hitNo description
PROSITE profilePS500899.789128174IPR001841Zinc finger, RING-type
PROSITE patternPS005180146155IPR017907Zinc finger, RING-type, conserved site
SMARTSM006474.9E-15196258IPR002867IBR domain
SuperFamilySSF578504.59E-6203262No hitNo description
PfamPF014854.9E-10208258IPR002867IBR domain
SMARTSM006470.54259323IPR002867IBR domain
SuperFamilySSF578503.06E-11267325No hitNo description
SuperFamilySSF474594.97E-12364427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.217366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-6372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-12374426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-5377416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.58E-7378420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MENPLSSHSH IPSFDMEDNA FSFTPTSRNP STIPINVDDD DDGDGDGDLR SITASLLKSA  60
PKPTEASNFI DLSEETLDFY DGDDELRILR FKPSNTPFGK RRKKTFSDFS VTESGQSSNS  120
KSVPDFVCEI CVDHKSGIEL FRIENCSHGY CTDCMVKYVA SKLQENITSI RCPVPDCIGL  180
LEPEYCRPIL PREVFDRWGT AMCEAVILGS EKFYCPYKDC SAMLIDDGSE VVRQSECPNC  240
WRMFCAHCKV PWHEGIDCEE FVRLNKEDIM LMNLAKEKQW PRCPNCRFFV EKSVGCMFMM  300
CRCRTAFCYN CGDLMSNNHA HNCRRTAKSL SRFISTFHEV LGGASFKWPE VLCRLNKPKG  360
RRKRRRRRAV PVDDGQLRRE KIADRMKKLQ ELVPNSNKAD KAYMLDEIIE YVRLLQLQVK  420
ELSMSKIGAA GAVVPLITDS KGCQTKVKNG LPQLPSIGQE ADISFDETAL EQAVRLMESD  480
ANKAMQHLKS KSFRLMPVAL ADAISTGKEL SSSPSTPVSD DWQKKKTSFA GVAHNNKLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360367RRKRRRRR
2361365RKRRR
3361367RKRRRRR
4362367KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037384.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359682.10.0PREDICTED: probable E3 ubiquitin-protein ligase RNF217
TrEMBLA0A498HW190.0A0A498HW19_MALDO; RBR-type E3 ubiquitin transferase
STRINGXP_009359682.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-33LJRHL1-like 1