PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037179.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 247aa MW: 28294.9 Da PI: 9.9474

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037179.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.6	1.1e-31	1	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 +p+G+rF+Ptdeelv +yL +kv++ +l++ ++i+e+d+++++P+ Lp v +e++++f+ + +ky +ra+ gyWk gk+k+++++ + Pbr037179.1 1 MPVGYRFRPTDEELVIHYLMRKVHAAPLPA-SIIPEFDVFQTHPSGLPGDV--RETRYFFYNEIMNKY----VGKRAAGCGYWKPIGKKKQIVANskS 91 699*************************.89***********554..556666666666666....46889999*********98667 PP NAM 97 gelvglkktLvfy...........kgrapkgektdWvmheyrl 128 +e+vg++ktL f +++++++++t+W+mheyrl Pbr037179.1 92 NEAVGIRKTLGFCerkrrgchnhhHETTKTTTQTRWLMHEYRL 134 778******77776665554366777789******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.899	1	160	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-36	1	160	IPR003441	NAC domain
Pfam	PF02365	5.0E-21	2	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MPVGYRFRPT DEELVIHYLM RKVHAAPLPA SIIPEFDVFQ THPSGLPGDV RETRYFFYNE 60 IMNKYVGKRA AGCGYWKPIG KKKQIVANSK SNEAVGIRKT LGFCERKRRG CHNHHHETTK 120 TTTQTRWLMH EYRLVASQAN PTQAFKAGVG NWVLFRIFQK KRRPTQRTSD DMGVVSQRSS 180 NCKRNRRLVE EYISAADHRS RRSDPDLTTV SSPSCSSDIT HELTSNDNGE LDDDQEEHSV 240 SMRINI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-20	1	161	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-20	1	161	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-20	1	161	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-20	1	161	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-20	1	161	20	169	NAC domain-containing protein 19
3swm_B	3e-20	1	161	20	169	NAC domain-containing protein 19
3swm_C	3e-20	1	161	20	169	NAC domain-containing protein 19
3swm_D	3e-20	1	161	20	169	NAC domain-containing protein 19
3swp_A	3e-20	1	161	20	169	NAC domain-containing protein 19
3swp_B	3e-20	1	161	20	169	NAC domain-containing protein 19
3swp_C	3e-20	1	161	20	169	NAC domain-containing protein 19
3swp_D	3e-20	1	161	20	169	NAC domain-containing protein 19
4dul_A	3e-20	1	161	17	166	NAC domain-containing protein 19
4dul_B	3e-20	1	161	17	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037179.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344208.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Refseq	XP_009352244.1	0.0	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A498HF84	1e-171	A0A498HF84_MALDO; Uncharacterized protein
STRING	XP_009344208.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009352244.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-37	NAC domain containing protein 83