PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037165.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 410aa    MW: 43641.4 Da    PI: 7.1387
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037165.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.68.9e-21306368163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae++eL+ ++++L++eN +L++e+++++ e++ l se+
  Pbr037165.1 306 ERELKRQKRKQSNRESARRSRLRKQAECDELALRAEALKEENGTLRSEVNRIRSEYELLLSEN 368
                  89*******************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.9E-54137273No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-16299364No hitNo description
PfamPF001702.3E-19306368IPR004827Basic-leucine zipper domain
SMARTSM003389.5E-21306370IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.61308371IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-10309365No hitNo description
CDDcd147021.90E-23311361No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGSSEMDKPS KEKEKETKTT PASTQEQSAT TSAGAVNPEW SGFQAYSPIP PHGFMASSPQ  60
AHPYMWGVQH IMPPYGTPPH PYVAMYPHGG LYAHPSMPPG SYPFSPFAMP TPNGIVEAFG  120
NTPGSMEADG KPSEVKDKLP IKRSKGSLGS LNMITGKNNE LGKTSGASAN GVYSKSAESA  180
SDGTSEGSDA NSQSDSQLKS GVRQDSLEGD VSQNGSSAHG SQNGAPNTHT MLNQTMAVMP  240
ITAAGAPGFV PGPATNLNIG MDYWGAPPSA AMPAMRGKVA TTPVSAGIVT AGSRDSVQSQ  300
LWLQDERELK RQKRKQSNRE SARRSRLRKQ AECDELALRA EALKEENGTL RSEVNRIRSE  360
YELLLSENAS LKERLGEIPG HEDVRSARSE PHLSNDTKQI AQTERHGGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328RRSRLRK
2322329RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9518770.0KC951877.1 Pyrus pyrifolia bZIP protein (bZIP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344137.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_009344138.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_018500237.10.0PREDICTED: bZIP transcription factor 16-like isoform X2
SwissprotQ501B21e-174BZP16_ARATH; bZIP transcription factor 16
TrEMBLS5VLX20.0S5VLX2_PYRPY; BZIP protein
STRINGXP_009344137.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-157basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]