PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037113.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 482aa    MW: 53919.4 Da    PI: 6.7489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037113.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11307352454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N +f  Lr+++P+       +++Ka+ L  Av YI++L
  Pbr037113.1 307 NHVEAERQRREKLNCRFYALRSVVPNV-----SRMDKASLLSDAVVYINEL 352
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-3921208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.22E-16301365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.76E-13301356No hitNo description
PROSITE profilePS5088816.425303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15307364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-15309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEEIISSCSS QNFGQENSPT QQRLQFLLQN RPERWIYSIF WEASKHSNDL VSLSWAGGHF  60
QSTRDLTSQK TYNKISHHQP KLGFDVLERK RAISREVEAL FHEDMDVDGG DVTDAEWFYF  120
YTVSLTQSFT AGHGNSNILG RTFCSGGFVW LAGDHELQFY ECERVKEARM HGIQTLVCIA  180
TSCGVLELAS LDVIKENWGL VQLSKSLFES DNTTTTTDKV SKQLSSRLEN HVPLLESGMF  240
SGADKNEWAT QGGTKEAAPV NVGGSSSDSG PSDSVGNLTS KNTENIRLKK RGRSSNRETG  300
RPESPINHVE AERQRREKLN CRFYALRSVV PNVSRMDKAS LLSDAVVYIN ELKARVGQLE  360
SKIQAQLQKP GVDIGGQTSS IVDHHQTRPR LSSSYNNRAV GDMEMDVKIV GSEAMLRVQC  420
PDCNYPNARL MNALKDLELQ VYHASISSVK ELMIQDVVVR VPHGFTSEEA MRTAILNRWY  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-242120810192Transcription factor MYC3
4rqw_B5e-242120810192Transcription factor MYC3
4rs9_A5e-242120810192Transcription factor MYC3
4yz6_A5e-242120810192Transcription factor MYC3
5gnj_A5e-24303377481Transcription factor MYC2
5gnj_B5e-24303377481Transcription factor MYC2
5gnj_E5e-24303377481Transcription factor MYC2
5gnj_F5e-24303377481Transcription factor MYC2
5gnj_G5e-24303377481Transcription factor MYC2
5gnj_I5e-24303377481Transcription factor MYC2
5gnj_M5e-24303377481Transcription factor MYC2
5gnj_N5e-24303377481Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287293LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359541.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498IA550.0A0A498IA55_MALDO; Uncharacterized protein
STRINGXP_009359541.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-61bHLH family protein