PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037013.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 514aa    MW: 56240.2 Da    PI: 5.2873
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037013.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.72.1e-1031255041374
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 
                  lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l + +    k l    +++++    +++++aa++l++++sP++
  Pbr037013.1 125 LVHLLMAAAEALTGANKSrdLARVILFRLKELVSPTDgSNMERLAAYFTEALQGLLEGAGGLHGKHLIGIGAHHDHghhpTDDVIAAFQLLQDMSPYV 222
                  68**********997776669***********9987769******************95544444442222222223456****************** PP

         GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                  kf+h+taNqaIleav++++rvH++D+di++G+QW++L+qaL sR+egpp  +lRiT++++  sg  s  +++etg+rL+ fA+++g pf+f+    ++
  Pbr037013.1 223 KFGHFTANQAILEAVAHDRRVHVVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGGSGrrSIGTVQETGRRLTAFAASIGQPFSFHQCRLDS 320
                  *********************************************887666*********888898999************************9999* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                   e++++++L++ +gEal++n++l+l ++  +s+++     ++L+  k+l+P++v++ve+e+   +++ F++rf+++l++ysa++dslea++p ++++r
  Pbr037013.1 321 DETFRPSALKLVKGEALVINCMLNLPHFNYRSQDSIA---SFLSGSKTLNPRLVTLVEEEVRPaGDGGFVARFMDSLYHYSAVYDSLEAGFPMQNRAR 415
                  ****************************966665555...9********************999********************************** PP

         GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  + vEr++lg++i   +    +     +e  ++W e+l+++GFkp+p+s  + +qaklll  ++ dgyr ee  ++ lvlgWk+r L+s+S W+
  Pbr037013.1 416 ALVERVFLGPRIAGSLGRIYRG---HEEVGSSWWEWLGAVGFKPMPISFANHCQAKLLLGLFN-DGYRAEEVaNHRLVLGWKSRCLLSASIWT 504
                  ****************999998...6677789*******************************.******76488899**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.45599484IPR005202Transcription factor GRAS
PfamPF035147.2E-101125504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MTQLLLSSAM AIAIDGHDLD LDLSGCTTTT TSTNTVSTDH WYDWSPVVDW DALEPTDHLA  60
GEDFHGLIES MMEDQDGSTE LNLSSAQNEH LELEASNDTT SSAEMMTLTD EDGSANGEDS  120
KGLRLVHLLM AAAEALTGAN KSRDLARVIL FRLKELVSPT DGSNMERLAA YFTEALQGLL  180
EGAGGLHGKH LIGIGAHHDH GHHPTDDVIA AFQLLQDMSP YVKFGHFTAN QAILEAVAHD  240
RRVHVVDYDI MEGIQWASLM QALVSRKEGP PTPHLRITAL SRGGSGRRSI GTVQETGRRL  300
TAFAASIGQP FSFHQCRLDS DETFRPSALK LVKGEALVIN CMLNLPHFNY RSQDSIASFL  360
SGSKTLNPRL VTLVEEEVRP AGDGGFVARF MDSLYHYSAV YDSLEAGFPM QNRARALVER  420
VFLGPRIAGS LGRIYRGHEE VGSSWWEWLG AVGFKPMPIS FANHCQAKLL LGLFNDGYRA  480
EEVANHRLVL GWKSRCLLSA SIWTSPSESD VIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-541115075382Protein SCARECROW
5b3h_A6e-541115074381Protein SCARECROW
5b3h_D6e-541115074381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037013.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344104.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A498I2040.0A0A498I204_MALDO; Uncharacterized protein
STRINGXP_009344104.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-157GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]