PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036657.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 299aa    MW: 33224.8 Da    PI: 7.972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036657.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002881103123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C++ F++   L  H++ H
  Pbr036657.1  81 FQCSYCSRKFNSYQALGGHQSAH 103
                  89**************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-679108No hitNo description
PfamPF139121.2E-881105IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.80181108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEAKDEMDHD LLTLMNPPPP PPPYPRHPNS SLSPCPSHFP FNNLPPSIRP SSHQIPTHSQ  60
PPATPHAYRA SSSTAAATRS FQCSYCSRKF NSYQALGGHQ SAHKSERAAA RRSFVGAHKS  120
ERAAPRHPHH VPTFNVPPAP SQYQIMPINV PRQPHDVDDH AQHYLYGLHQ YHQLQQSHHQ  180
QQPEVAVRDS SSSFLIETGH IIQQDNQPPK YSWAMDLSNI STTNYHPHHL IPAAASTYSL  240
PRMIHGPTTI ELPQPLFSSA PPSSHTHQYY HGHPQNATAA HSPGDNDTPH SLDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036657.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343844.10.0PREDICTED: uncharacterized protein LOC103935759
TrEMBLA0A498J3L62e-55A0A498J3L6_MALDO; Uncharacterized protein
STRINGXP_009343844.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-10C2H2 family protein