PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036349.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 535aa    MW: 61127.7 Da    PI: 8.8646
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036349.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.24.4e-2837121187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+ aL+++r++m+ ++r+++lk+plWe+vs+k+ e g+ rs+k+C+ek+en+ k+++++keg++k+  ++ +t+++fd+lea
  Pbr036349.1  37 RWPRQETVALLKIRSQMDAAFRDSSLKAPLWEDVSRKLDELGYYRSAKKCREKFENVYKYHRRTKEGRSKK--QEGKTYRFFDELEA 121
                  8********************************************************************97..55557******985 PP
2trihelix100.41.5e-31379463186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+  ev aLi++r++++ +++++  k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+k ++k r se+s+tcpyf+ql+
  Pbr036349.1 379 RWPSVEVEALINLRTYLDVKYQEAGPKGSLWEEISAGMRRLGYNRSAKRCKEKWENINKYYKKVKVSSKTR-SEDSKTCPYFHQLD 463
                  8********************************************************************98.89999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0193496IPR001005SANT/Myb domain
CDDcd122039.04E-2236101No hitNo description
PROSITE profilePS500906.8063694IPR017877Myb-like domain
PfamPF138372.0E-1836121No hitNo description
SMARTSM007170.011376438IPR001005SANT/Myb domain
PfamPF138379.9E-22378463No hitNo description
CDDcd122039.36E-27379443No hitNo description
PROSITE profilePS500907.004379436IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAEVVREGRQ ESETTEVLSN SVQEGNKGHR SLYGGNRWPR QETVALLKIR SQMDAAFRDS  60
SLKAPLWEDV SRKLDELGYY RSAKKCREKF ENVYKYHRRT KEGRSKKQEG KTYRFFDELE  120
AFDHQNHHHS STIIPAKPQV VLWPIMNNNH PNNPSLVVPH VTTTTLPLSS TPSIMAPTNG  180
SLPNCPQISP PHITKSPLNL SQQNINGFKP NSATNNLFLS STSSSASDKE FQVQPRDKRK  240
MKWKYFFRRL TKDVLEKQEK LQEKFLEAIA KCEHQRMVRE AAWRKEEMAR MSKEHEILAQ  300
ERSLAAAQDA AVIEFLQKFS GQQNSTNIQA LEAPSSRPHP LPVLMPPQLQ APVAVITSST  360
FDVPKLNNGE SPFPGGSTRW PSVEVEALIN LRTYLDVKYQ EAGPKGSLWE EISAGMRRLG  420
YNRSAKRCKE KWENINKYYK KVKVSSKTRS EDSKTCPYFH QLDILHCKKN NKNNAGHVVK  480
PNAETMQPLI NVQPDQPAIE DIERENGDRN EDDEDGESTE EEDRNDDQME MVTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500095.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A498IPX80.0A0A498IPX8_MALDO; Uncharacterized protein
STRINGXP_008381818.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-108Trihelix family protein