PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036347.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 448aa    MW: 51603.5 Da    PI: 6.5478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036347.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.7e-26122218185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt+q+v++Li+a+++++e+ ++++           +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  Pbr036347.1 122 KWTDQMVKLLITAVSYIGEDTSSDCggggrrkysvlQKKGKWKSVSKVMAERSYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 218
                  7**********************9888999999999**********************************************569999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-23120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEEHLSQGGG GGMVPGGASY GGLDLQGSMR GHQQPQHPHT IHHHHPQPRQ GSLVHPPIPE  60
GFPLKMGTMH HCDQTISMLD YNKGERCKNS ASDEDEPSYV EEGDGHAEAS RGKKGSPWQR  120
VKWTDQMVKL LITAVSYIGE DTSSDCGGGG RRKYSVLQKK GKWKSVSKVM AERSYRVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QKSLHRALRR DDLDNDDLRR HHHDDLDEDD QDMENEEHDD  300
FEENNALRGD NRGIYISEDS VKRLRQGQGH EDFNFGSSSN SQDCNKSSYF HPQIPQPDMN  360
QVLPDGTKAA WLQKQWVESR SFQLEEQKLQ IQVEMLELEK QRLKWQRFSK KRDRELEKMR  420
MENERMKLEN ERMALELKQK EMGAGFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343631.10.0PREDICTED: uncharacterized protein LOC103935584
TrEMBLA0A498IQM20.0A0A498IQM2_MALDO; Uncharacterized protein
STRINGXP_009343631.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-147sequence-specific DNA binding transcription factors