PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035712.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 317aa    MW: 35403.1 Da    PI: 6.9254
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035712.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof104.56e-331773662
       zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                  +cprC   ntkfCyynnysl+qPryfCk+CrryWtk G+lrnvP+Ggg+r+n+k+s
  Pbr035712.1 17 PNCPRCGCCNTKFCYYNNYSLTQPRYFCKGCRRYWTKRGSLRNVPIGGGCRRNRKRS 73
                 58***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-231666IPR003851Zinc finger, Dof-type
PfamPF027018.0E-271771IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.9811771IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERAGWKPND DHLHTSPNCP RCGCCNTKFC YYNNYSLTQP RYFCKGCRRY WTKRGSLRNV  60
PIGGGCRRNR KRSKSLRLSA TTTCTTEGHA HHNTNKSRAN TYEGAHNSYG TNVLGNSTSP  120
SVTQDGSHID LALVYANFLK QKPDNSDSTT GSDHQLPELP SEFDPIALDF LSMELNMNNA  180
SSDNTSTQLM DNHHHQNGLV GLLGFHTLSH DHLSTENCST NDRMYFDGLD PLIHHPEKHH  240
HQHTGEVVQY ASDFGLPPLP GQEALWFTTS QMMDSGSHTM QVGTSLLGHE LHNPNLLMDG  300
WSPFDLPCNE TFSRST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035712.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343265.10.0PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBLA0A498ID580.0A0A498ID58_MALDO; Uncharacterized protein
STRINGXP_009343265.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-39Dof family protein