PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035265.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 442aa    MW: 50523.3 Da    PI: 5.6257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035265.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.72.2e-2331411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdLpkkvkaeek.......ewyfFskrdkkyatgkrknratksgy.Wkatg 87 
                  lp+G+rF Ptdeel+ +yL++kv+gk+++ +    + ++d+y v ePwd+ +k+k++++       ++yfF++ + k+++g+r  r+  sg  W+   
  Pbr035265.1   3 LPAGYRFCPTDEELILYYLHPKVNGKEVPGQGNspVFDFDLYGVtEPWDIWEKFKTKREndlklsnDLYFFTTLKLKTTEGTRICRTLPSGSkWNGEN 100
                  799************************776543348899999866*****754433222223344477******************8887766***** PP

          NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +  e++++ ++ ++g kk + + k + ++ ++ +W+m e+ +
  Pbr035265.1 101 RPSEIKNSgSEDVIGHKKRFSYRK-NGSDDQQDRWIMYEFDI 141
                  ******99556679*******985.555568********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-241162IPR003441NAC domain
PROSITE profilePS5100529.0673163IPR003441NAC domain
PfamPF023656.0E-164140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MNLPAGYRFC PTDEELILYY LHPKVNGKEV PGQGNSPVFD FDLYGVTEPW DIWEKFKTKR  60
ENDLKLSNDL YFFTTLKLKT TEGTRICRTL PSGSKWNGEN RPSEIKNSGS EDVIGHKKRF  120
SYRKNGSDDQ QDRWIMYEFD IDQKLVLEPK QENKIVLCML RKKVNGSEKK RKHGDLEDEE  180
MLGDNNMDIS NGDSNYGDLD RKQVVSLETQ EKQQCFLPSN AGYLIPRVQR PEVYDPLQQF  240
HPQSIVYNVV RPQTPLQLEQ VDFHGKRNWG LQHLHQGEET WKNKLLKTCI NNNIQGRASG  300
SEQKALQREE NREHQSFMSC VDNVQALGAD HEQSALLKEV NWRQQCSMPC LDSALQQEGE  360
NHQVQQSSQD NVANGSLINN NIPHCTEPVP PYGLTIDQVD HAGSGDVHGG FGAANDDFAY  420
TPWIESFAKE LLRINCSSKF N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035265.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342921.10.0PREDICTED: uncharacterized protein LOC103934887
TrEMBLA0A498IPN40.0A0A498IPN4_MALDO; Uncharacterized protein
STRINGXP_009342921.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.28e-16NAC domain containing protein 38