PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035149.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 513aa    MW: 57176.6 Da    PI: 7.1951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035149.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11314360455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Pbr035149.1 314 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 360
                  799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-3818215IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.96E-13308363No hitNo description
SuperFamilySSF474599.16E-17308376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15314376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSSCNPPNFC RETSSKFQQS LQFIIQNRPE WWVYSIFWQA SKDSISDQVS LSWAAGHFQN  60
TRDHLESKRS NRVTNSYQPK FGFNNVGRKK TINREVEALL HDDMVDLDMR LVDQGDVADN  120
EWFYSYTVSL TQSFSASHGN NSDNILGRAF GSGGFVWLAA DHEFQFYECE RVKEAGMNGI  180
QTLVCIATPC GVLELASLDV IKEDWGLVQL SKSLFGSDGN INKTLSKQTS HDGNVIAPIL  240
ENGLFSAAEK ELTRQDRGGI NEAAPINLGR SSPESPSDSV DNFTSENTES MTRTKKRGRS  300
SNHGSASRES QLLNHVEAER QRREKLNHRF YVLRSVVPNV SKMDRSSLLA DAVAYINQLK  360
SKVGELEVKV QEQPQKPKAC NNASNSLDHH SGQSTSSKVE QRHCSNNNDS NIISSNNNNN  420
NNNINSDRGA AAVVEVDVKI MGSEAIIHVQ RSDQGYPYAK LMNALKGLGL QVYHASISSV  480
KELMIQDVVA RLPYGFTGEE ALRNGIIKRW YR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-22313363757Transcription factor MYC2
5gnj_B1e-22313363757Transcription factor MYC2
5gnj_E1e-22313363757Transcription factor MYC2
5gnj_F1e-22313363757Transcription factor MYC2
5gnj_G1e-22313363757Transcription factor MYC2
5gnj_I1e-22313363757Transcription factor MYC2
5gnj_M1e-22313363757Transcription factor MYC2
5gnj_N1e-22313363757Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035149.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358714.10.0PREDICTED: transcription factor MYC4-like
TrEMBLA0A498JL860.0A0A498JL86_MALDO; Uncharacterized protein
STRINGXP_009358714.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-54bHLH family protein