PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033937.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 480aa    MW: 52646.4 Da    PI: 7.1789
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033937.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17155204155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pbr033937.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204
                  78*******************......55************************997 PP
2AP239.61.3e-12247297155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++ + k++g
  Pbr033937.1 247 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKTAIKYNG 297
                  79********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-9155204IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-15155213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-16156212IPR001471AP2/ERF domain
PROSITE profilePS5103217.385156212IPR001471AP2/ERF domain
SMARTSM003802.0E-30156218IPR001471AP2/ERF domain
PfamPF008474.8E-8247297IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-16247306IPR016177DNA-binding domain
CDDcd000181.51E-23247307No hitNo description
Gene3DG3DSA:3.30.730.101.1E-14248305IPR001471AP2/ERF domain
PROSITE profilePS5103215.685248305IPR001471AP2/ERF domain
SMARTSM003801.8E-28248311IPR001471AP2/ERF domain
PRINTSPR003672.1E-5249260IPR001471AP2/ERF domain
PRINTSPR003672.1E-5287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLDLNLNVVV SGQNDVQSCG TQMDESGTSN SSVVNADASS TNDDSCSARA ARNDAVTIFN  60
FGILKVRDGE EEEDDDVVVT KELFPVTGGL NNWPGQGESS SSSPLVRKNL MELGFTRGSA  120
GEVRLVQQKQ PPQPAAPPPQ QQAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGVDADIN YNLSDYEDDL KQMKNLTKEE FVHILRRQST  240
GFSRGSSRYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EVEAARAYDK TAIKYNGREA  300
VTNFEPSTYE GKMMSEAGNE DGNHNLDLNL GISPPSFGTG QKEGEGRLQF HSGPFDVHNG  360
KRMEHNVNLT MSDPPFKGLV MTSDHHPPLW NGVYPSYFSN QENATEKSLA LGSQGHPNWA  420
WQMHGQVTPM PLFSTAASSG FSFSANAPAA AVHPLQPPNP TALNLCFTSP AAATTRTSQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033937.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844370.0KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358270.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_018503409.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ8H4431e-111AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A498KAW80.0A0A498KAW8_MALDO; Uncharacterized protein
STRINGXP_009358270.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-110related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]