PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033914.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 270aa    MW: 30129 Da    PI: 9.9075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033914.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00154061223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg++F++   L  Hi+ H
  Pbr033914.1 40 TCSECGMRFRNGQALGGHISIH 61
                 6**************9999988 PP
2zf-C2H2157e-0594115223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ C+k+F++  +L  H+ +H
  Pbr033914.1  94 SCQVCNKTFPSMKSLCGHMGSH 115
                  7******************887 PP
3zf-C2H214.69.3e-05166188123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F++   L  H r+H
  Pbr033914.1 166 HVCPICFKTFPTGQALGGHKRSH 188
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-63961No hitNo description
SMARTSM003551.13961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2033970IPR007087Zinc finger, C2H2
PfamPF139122.0E-44057IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-688115No hitNo description
PROSITE profilePS501578.99593120IPR007087Zinc finger, C2H2
SMARTSM003550.00593115IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-695117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139127.0E-11165189IPR007087Zinc finger, C2H2
PROSITE profilePS501578.933166193IPR007087Zinc finger, C2H2
SMARTSM003550.072166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKTFQRKILG EYLNGADDTK GKELVLYNGH KTQAVDRSRT CSECGMRFRN GQALGGHISI  60
HFQRHLGPKN NKKFKVKQQQ LLLEYPSWNN SRLSCQVCNK TFPSMKSLCG HMGSHRQRAQ  120
SPPPSSSLSS ADQYSDGDSY IDSASKHYKY PKSKKRKFLD GYKGHHVCPI CFKTFPTGQA  180
LGGHKRSHYY KGEPVLKATG AAKNKVASTD GHEDSAKIKV ASADDREDCV IIDPGSQFWT  240
DKTIHVASRR ILLDLDLNKP PKEDDDVSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033914.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358369.10.0PREDICTED: zinc finger protein ZAT3-like
TrEMBLA0A498K8B01e-168A0A498K8B0_MALDO; Uncharacterized protein
STRINGXP_009358369.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16199410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-11C2H2 family protein