PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr033913.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 516aa MW: 57503.9 Da PI: 6.0614 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 95 | 116 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F++ +L+ H+r+H Pbr033913.1 95 SCYVCKKDFPSIKSLHGHMRLH 116 69******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.66 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-6 | 42 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.71 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.79E-7 | 95 | 116 | No hit | No description |
Pfam | PF13912 | 1.2E-5 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.79E-7 | 442 | 469 | No hit | No description |
Pfam | PF13912 | 2.1E-7 | 447 | 469 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.59 | 447 | 469 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 447 | 474 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 449 | 469 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MDDDVVHAQE IEEQVALRGD DYHKGKQVVL DSDVHHRSGD RVCEQCGKRF QNGKALGGHR 60 KVHLNQSLLP QKNKALFKQK KKHGSSKGGS SSEVSCYVCK KDFPSIKSLH GHMRLHRERD 120 WKGVRPPGAV QPLSEESKSS SYENGSDDDG EDDGNDDGYG DSSFSDHTIE TDNDAAIFLV 180 NWRNIEQRRR IAYQRDPNGE DKVSEFGRKK LIEESPVGYK GNPSSKNIKF DDGSKKITKE 240 GSKNFGGAKP KKDFSLFGQT HKQISRKPQD FRVTRSDATL SDRNVDESAG FSSKYAAHQV 300 SESALEKAIE KSPGGYKGNK NSEKSRSESV NFVPNKLSIG GKEKASVDDY DDDDDDDHDN 360 DDENVDQTSW KVKLKKAMMK EVSKTGKKTI KDTALNDQTH YQISRKTQEF GAKYAERENY 420 NGPSATSNQV LERAEEAEAV EHETKEFVCN ICPSKFSTGQ ALGGHKRCHN NRVPVEEAPE 480 TAEVAPVAEE DGEITTVPEK LDLDLNQLPY ESNDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr033913.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018503391.1 | 0.0 | PREDICTED: uncharacterized protein LOC103948994 | ||||
TrEMBL | A0A498K8B0 | 0.0 | A0A498K8B0_MALDO; Uncharacterized protein | ||||
STRING | XP_008358936.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16199 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 2e-15 | C2H2 family protein |