PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr033560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 39415.5 Da PI: 7.1174 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 4 | 43 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 rg W + Ede+l ++v+++G+++W++Ia++++ gR++k ++ Pbr033560.1 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSEKRVV 43 899*****************************.***99876 PP | |||||||
2 | Myb_DNA-binding | 32.5 | 2e-10 | 141 | 167 | 18 | 46 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqk 46 +G++ W+ Iar ++ gRt++ +k++w+ Pbr033560.1 141 IHGNR-WAVIARLFP-GRTDNAVKNHWHV 167 7****.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.08 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-7 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.23E-9 | 3 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.1E-12 | 4 | 43 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 5 | 38 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-9 | 7 | 44 | No hit | No description |
SuperFamily | SSF46689 | 1.8E-12 | 69 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-15 | 80 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.34 | 95 | 173 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0017 | 99 | 171 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.92E-5 | 140 | 166 | No hit | No description |
SuperFamily | SSF46689 | 1.8E-12 | 141 | 169 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-7 | 141 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MCTRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLQGRSEK RVVNGLGLVY STLEGKEGYH 60 LIERCFCNII TYMNNIYELN DAGKSCRLRW FNQLDPRINR NPFTEEEEEX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXR IHGNRWAVIA RLFPGRTDNA VKNHWHVIMA RRCRERSRLN 180 HSKLIRNTST AQTSFMSIIT NNNEPKSSSK QDHPLQINCD IGTWNLDSYN YIGKYYSCSD 240 RNYHQYRPAF THSPPPPFPK EFYPNTCSAT MHQDHNKDQP IEFYDFLQVN TESNGSEVID 300 NARKEEEEVD QEGTGQQKSN VAGLPFIDFL AVNTGISS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr033560.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229592 | 5e-42 | KP229592.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB36) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009341782.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | A0A498I0N6 | 1e-173 | A0A498I0N6_MALDO; Uncharacterized protein | ||||
STRING | XP_009341782.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-64 | myb domain protein 52 |