PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HB-other | ||||||||
Protein Properties | Length: 527aa MW: 58091.2 Da PI: 6.6467 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L++ l L+ rqVk+WFqNrR+++k Pbr032713.1 91 KKRYHRHTAHQIQEMENLFKECPHPDDKQRMKLSQDLWLKPRQVKFWFQNRRTQMK 146 688999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 78 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 86 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.309 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-18 | 89 | 152 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-18 | 91 | 149 | No hit | No description |
Pfam | PF00046 | 4.7E-17 | 91 | 146 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MAMGGGNVVS PETLFPSPIH NPNFNFMPAH HQLPFQPLSP ILSPPKEENG VVMMMRGKEY 60 QMLEKGSGSD QVEEQSGNEQ EAHNQLQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR 120 MKLSQDLWLK PRQVKFWFQN RRTQMKAQQD RSDNVMLRTE NENLKNKNYR PQAALCNIMC 180 LDCGGPTMIG GIGIDEQHLR LENARLKEKA FPRVPDDFLY GNDSHASVAT TLMPSPEACK 240 NIMKLAQRMT RTVCVNMSTS NGQSWTAVSD SPDDTVRITT RKVTDPGQPI GVILTAASTT 300 WLTFSHYHVF ELLGKERHRA QPTAFYICSS IFLPMAIPCM KWLTLLMAFI LEIAFLFFRV 360 NVSSNSSQNA ELMLQERCTD KSGSLVMYAT MDVDGIQLAM SGEDPFCIPL LPLGFVIVPV 420 LPMQSSTSTA ADHGSSSPDQ NHESSVMNTG CLLTVGLQVL ASTSPSAKLN LSSAIAINNH 480 LCNSVQQIIS ALGSGNICTT TPDDDNGSVG DASGGSDHPT AASLQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032713.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028960260.1 | 1e-131 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_028960261.1 | 1e-131 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_028960262.1 | 1e-131 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_028960263.1 | 1e-131 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_028960264.1 | 1e-131 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_028960265.1 | 1e-131 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Swissprot | Q9FJS2 | 1e-65 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A498JPH8 | 1e-129 | A0A498JPH8_MALDO; Uncharacterized protein | ||||
STRING | XP_008341105.1 | 1e-144 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18826 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 6e-68 | homeobox-7 |
Publications ? help Back to Top | |||
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