PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032164.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 448aa    MW: 50185.5 Da    PI: 8.2189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032164.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.22e-161884262
          NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFs 62
                  pG+rF+Ptdeel+++yLk+k+eg    ++ evi+evdi+++ePwdLp      +v+++  +w f s
  Pbr032164.1 18 FPGVRFSPTDEELISYYLKNKLEGPVpGKTVEVISEVDICNFEPWDLPDgrivcRVTKNPAKWAFLS 84
                 79*********************9886455589**************94466655555555887765 PP
2NAM92.95.3e-2912220447128
          NAM  47 Lpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  L    +v ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s +++ +g+k+tLvf+ grapkge+t+W+mhey +
  Pbr032164.1 122 LSGskSVIQSENEWFFFSPRGRKYPNGSQSRRATEFGYWKATGKERNVKS-SSNIIGTKRTLVFHIGRAPKGERTEWIMHEYCI 204
                  431334445789**************************************.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-15768IPR003441NAC domain
PROSITE profilePS5100545.36117220IPR003441NAC domain
PfamPF023651.3E-2319203IPR003441NAC domain
SuperFamilySSF1019415.75E-33129219IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGAVSKEAQL SIAASSMFPG VRFSPTDEEL ISYYLKNKLE GPVPGKTVEV ISEVDICNFE  60
PWDLPDGRIV CRVTKNPAKW AFLSSVPPRE MIISLGVRRR EMINLKDGVI YSKPSSPKQQ  120
NLSGSKSVIQ SENEWFFFSP RGRKYPNGSQ SRRATEFGYW KATGKERNVK SSSNIIGTKR  180
TLVFHIGRAP KGERTEWIMH EYCINDKPQD SMVVCRLRKN SEFRLNDTTN QGCSSRTPLS  240
TMQNDGNAVS EIGNDQGDKA VECNSKKSTS SHDSHSIEQI DSASDSYPNP VTDAMQTDSN  300
GHQKGSYDED LYAEILNDDI IKLDESSVPA AHMMPVVANN SDAEHQSQHH MQATLSQAVP  360
FQGTANRRIH LRKRKEKFCA ESQNSSNSEQ SRKALVNWMD DRHMLLYVFF VFLVLLAVFL  420
SNFCFPDVAG SVSARFGRIL ASQKHHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-2513122069165NO APICAL MERISTEM PROTEIN
1ut4_B8e-2513122069165NO APICAL MERISTEM PROTEIN
1ut7_A8e-2513122069165NO APICAL MERISTEM PROTEIN
1ut7_B8e-2513122069165NO APICAL MERISTEM PROTEIN
3swm_A8e-2513122072168NAC domain-containing protein 19
3swm_B8e-2513122072168NAC domain-containing protein 19
3swm_C8e-2513122072168NAC domain-containing protein 19
3swm_D8e-2513122072168NAC domain-containing protein 19
3swp_A8e-2513122072168NAC domain-containing protein 19
3swp_B8e-2513122072168NAC domain-containing protein 19
3swp_C8e-2513122072168NAC domain-containing protein 19
3swp_D8e-2513122072168NAC domain-containing protein 19
4dul_A8e-2513122069165NAC domain-containing protein 19
4dul_B8e-2513122069165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376RKRKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032164.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499423.10.0PREDICTED: NAC domain-containing protein 40-like, partial
SwissprotQ9XIN71e-61NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A498IMV00.0A0A498IMV0_MALDO; Uncharacterized protein
STRINGXP_009340876.10.0(Pyrus x bretschneideri)
STRINGXP_009340881.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-62NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]