PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 737aa MW: 79982.2 Da PI: 6.5047 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 307 | 327 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Pbr032118.1 307 PCPDFRK-GACRRGDMCEYAHG 327 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.3E-19 | 43 | 195 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-19 | 45 | 180 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.8E-11 | 83 | 154 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.94E-17 | 86 | 165 | No hit | No description |
PROSITE profile | PS50297 | 17.714 | 87 | 180 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0014 | 87 | 117 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 8.2E-5 | 88 | 103 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.568 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.9E-5 | 122 | 154 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 8.2E-5 | 141 | 155 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 302 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-5 | 307 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 335 | 365 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 52 | 337 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MCNGSDKIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIESFKRS 60 IEQDPSAIDE IGLWYCRQKG SKQMVNEQRT PLMVAATYGS IDVVKLILSL SDADVNQACG 120 HDRSTALHCA ASGGAENAVD CVKLLLEAGA DPNSLDANGH RPIDVIVVPP RLQNVKLAIE 180 ELLVINGTAG EKTLTVSTRT IHSTSPPLSA SPENGSPSAL DFTCSPTKSK FYNSLSSTSE 240 KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTTCA RRVCFFAHTT 360 EELRPLYVST GSAVPSPRSS TSGASAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN 420 GMSHSSLGWP QPNVPALHLP GSNLQSSRLR SSLCARDMPA DDFDLLPEFD MQQQQLQQQQ 480 LLNELSCLSQ PSLSNNSLNR SGRRTTLTPS NLDDIFSAES LSPRYSDQSL QSGVFSPTHK 540 SAVLNQFQQQ QSILSPIHTN FSPKTVDHAL LQASYGGPSS GRMSPRNVEP ISPMGSRVSM 600 LAQREKQQQF RSLSSRELGS SSASIVGSSP NSWSKWGSSN GKPDWAVSTD ELGKLRRSSS 660 FELGNNGEEP DLSWVQSLVK ESPTDIKEKQ TPSSAVTATG SSNNGPSANS QREAVDHAVL 720 GAWIDQMHLD LVAQQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032118.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM253564 | 0.0 | FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340782.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_009340785.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | D9ZIV2 | 0.0 | D9ZIV2_MALDO; C3HL domain class transcription factor | ||||
STRING | XP_009340782.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009340785.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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