PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr031253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 18822.7 Da PI: 4.7886 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.2e-15 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + kGVr++k +g+Wv+eIr+p g + r +lg+f tae Aa a++ a +l+ Pbr031253.1 18 KLKGVRQRK-WGKWVSEIRVP---G-TqDRLWLGSFSTAEAAAVARDVAYYCLRR 67 679*****9.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-7 | 18 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-16 | 18 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.50E-23 | 18 | 77 | No hit | No description |
SMART | SM00380 | 2.7E-23 | 18 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.02 | 18 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-23 | 19 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MSYSSEESGS PCSTANRKLK GVRQRKWGKW VSEIRVPGTQ DRLWLGSFST AEAAAVARDV 60 AYYCLRRPST LEGLNFPLEL PPCARDDMSP RSVQKAASDA GMAVDAQLIA NKSQPPQPAG 120 TGSNEVETTE FWGDGYVGES STSNSRGSWG GGHGFVNGGD LQGGLSISID DYDLQI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr031253.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018503149.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor ERF019-like | ||||
Swissprot | O80542 | 5e-42 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | A0A498JGG8 | 5e-92 | A0A498JGG8_MALDO; Uncharacterized protein | ||||
STRING | XP_009357194.1 | 1e-127 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22810.1 | 9e-37 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|