PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031198.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 536aa    MW: 58604.8 Da    PI: 6.9274
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031198.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.45e-26228282156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++Wtpe H+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  Pbr031198.1 228 KVKVDWTPERHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 282
                  5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.825225284IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-25226285IPR009057Homeodomain-like
SuperFamilySSF466896.72E-18226285IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25228282IPR006447Myb domain, plants
PfamPF002492.5E-6231280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLILSPLREG HHHHQLKDEK QLGDDGDVES SFAFNGGNNA VLDFPEFSGG MGMGNLLDSI  60
DFDDFFIGIH DGHVLPDLEM DSEILDFSVS APAGDTNTTT ITPSKEEEEV ADDYYNTAKT  120
TTTLSKVEEP VEEDMQGHDE VAAAAVSITS TNNNSGLLNQ NYSSSSTTTP TPDHRVNQEI  180
ASKRYDINEI RAAHRPSSGS TRRESADQKL ATKSSSTAQS KNSHGKRKVK VDWTPERHRR  240
FVQAVEQLGV DKAVPSRILE LMGIDCLTRH NIASHLQKYR SHRKHLLARE ADAASWTQRR  300
QMYGAAAAAG GGAGAKSRRD VMMMNSPNWL NAPTMGFPPI TSTTSPPMHH AQHHHQLTRP  360
LHVWGHPTMD QSMMHMCPPK HHLPHHFPSP VLPPPPPAPA HAWPPPLPPP PNASYWHHPH  420
SHHQRVPDGL TPGTPCFPRQ QAAPTRFPAP PVPGIPPHAV YKVDHAGIAV PTPPQPGPHP  480
LLDFHPSKES IDAAIGDVLS KPWLPLPLGL RPPTTDTVMV ELQRQGVPKI PPSCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14225280257ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031198.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357149.10.0PREDICTED: probable transcription factor GLK1 isoform X1
TrEMBLA0A498J8B30.0A0A498J8B3_MALDO; Uncharacterized protein
STRINGXP_009357149.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-66GBF's pro-rich region-interacting factor 1