PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr031076.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 748aa MW: 82420.9 Da PI: 5.1149

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr031076.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	35	109	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY YA ++GF+vr+ + ++s+++g++ +r++vCskeg++ + +rtgC a ++v+++++gkw+v+ + ++HnH l Pbr031076.1 35 DFYTLYAARMGFKVRTGQLYRSRTDGSVSSRRYVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 109 6*************************************765..............699*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-15	35	109	IPR004330	FAR1 DNA binding domain
Gene3D	G3DSA:3.40.50.1820	4.9E-32	185	441	IPR029058	Alpha/Beta hydrolase fold
SuperFamily	SSF53474	1.21E-44	188	444	IPR029058	Alpha/Beta hydrolase fold
Pfam	PF12146	1.7E-8	222	333	IPR022742	Serine aminopeptidase, S33

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MMPPMNAVDT EDEGESGVLE PYVGLEFDSA DVARDFYTLY AARMGFKVRT GQLYRSRTDG 60 SVSSRRYVCS KEGFQISSRT GCPALIRVQR RDSGKWVVDL FLKDHNHGLG SSAEENHSPI 120 FQKKSSMPTN SVVEVSHRPK VKLIKAIEDK PPCPSGVITA KRLKRGGDEM QAEYDPKNDL 180 LDEEFILKGK WYQRKDVEVK NGRGDVLKCS HYTPIVSPGE KPLPCVIYCH GNSGCRADAS 240 EAAIILLPSN ITVFTLDFSG SGISGGDHVT LGWNEKDDLK TVVDYLRADG NVSLIGLWGR 300 SMGAVTSLLY GAEDPSIAGM GFDSPFSDLV DLMMELVDTY KIRLPKFTVK FAIQYMRRAI 360 QKKAKFDIMK LNTIKVASSC FVPVLFGHAI DDDFIQPHHS DRIFEAYMGD KNIIKFEGDH 420 NSPRPQFYFD SINIFFHNVL QPPEDEVGGT FFDTLHGTFG KGTWRSVHAA DYDHGRSTVS 480 AEAAPSSGQQ DAIRQLRSRR PMSRMDVPSG ISSTDGQSES KDGKSDNGPS SSDMISFEFA 540 NGSPCGPHVP TTMDDDQYVE YQLDDLAGFP SDVDEEERMF MEAVILSLKD LEIRGPQAEE 600 QPPGDTPDSL KSSQKDDQRD DASPAEKREL LETESTSTSV GHFGSLKTES SSTSVSKSHD 660 SRPEDQSRTR VPSTEPALQT PLSIMENGSA GPSSRSDASE SIQSSSDGDL SAKTTATVTV 720 VKNPASNVMD GLIRRWDFNF FRNNHSR*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MMPPMNAVDT EDEGESGVLE PYVGLEFDSA DVARDFYTLY AARMGFKVRT GQLYRSRTDG  60
SVSSRRYVCS KEGFQISSRT GCPALIRVQR RDSGKWVVDL FLKDHNHGLG SSAEENHSPI  120
FQKKSSMPTN SVVEVSHRPK VKLIKAIEDK PPCPSGVITA KRLKRGGDEM QAEYDPKNDL  180
LDEEFILKGK WYQRKDVEVK NGRGDVLKCS HYTPIVSPGE KPLPCVIYCH GNSGCRADAS  240
EAAIILLPSN ITVFTLDFSG SGISGGDHVT LGWNEKDDLK TVVDYLRADG NVSLIGLWGR  300
SMGAVTSLLY GAEDPSIAGM GFDSPFSDLV DLMMELVDTY KIRLPKFTVK FAIQYMRRAI  360
QKKAKFDIMK LNTIKVASSC FVPVLFGHAI DDDFIQPHHS DRIFEAYMGD KNIIKFEGDH  420
NSPRPQFYFD SINIFFHNVL QPPEDEVGGT FFDTLHGTFG KGTWRSVHAA DYDHGRSTVS  480
AEAAPSSGQQ DAIRQLRSRR PMSRMDVPSG ISSTDGQSES KDGKSDNGPS SSDMISFEFA  540
NGSPCGPHVP TTMDDDQYVE YQLDDLAGFP SDVDEEERMF MEAVILSLKD LEIRGPQAEE  600
QPPGDTPDSL KSSQKDDQRD DASPAEKREL LETESTSTSV GHFGSLKTES SSTSVSKSHD  660
SRPEDQSRTR VPSTEPALQT PLSIMENGSA GPSSRSDASE SIQSSSDGDL SAKTTATVTV  720
VKNPASNVMD GLIRRWDFNF FRNNHSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr031076.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339931.1	0.0	PREDICTED: uncharacterized protein LOC103932104
TrEMBL	A0A498HRM2	0.0	A0A498HRM2_MALDO; Uncharacterized protein
STRING	XP_009339931.1	0.0	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-57	FAR1-related sequence 7