PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10986.5 Da PI: 5.1372 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.3e-07 | 9 | 58 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 WT +E + + a + + + W++ + ++ g++ q+ks++ ++l Pbr031053.1 9 QWTWQENKVFETALATYNIHciekgEWEKLSLLVP-GKSIDQIKSHFMQLL 58 7****************999***************.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.23E-8 | 8 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-4 | 10 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MAGGVSSDQW TWQENKVFET ALATYNIHCI EKGEWEKLSL LVPGKSIDQI KSHFMQLLMD 60 LEAIESDQEP LPDYKDDLFL MTKKGSRRQR QQRQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031053.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498JBT4 | 7e-55 | A0A498JBT4_MALDO; Uncharacterized protein | ||||
STRING | XP_004308717.1 | 3e-23 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17533 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 5e-15 | MYB family protein |