PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030436.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 244aa    MW: 27777.4 Da    PI: 8.5792
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030436.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.3e-34231142102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F+kg+k++l++i+
   Pbr030436.1  23 FLLKTYILVEDPATDDVISWNDDGSAFVVWQTAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFCNDKFRKGEKDQLCDIR 110
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr030436.1 111 RRKA 114
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3516106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-3218112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-5219112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGVCDEQKG LLEYVRKSSP PPFLLKTYIL VEDPATDDVI SWNDDGSAFV VWQTAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVATNR WEFCNDKFRK GEKDQLCDIR RRKAWATKPQ  120
PINNAVTQKA GAAALLPNEF DEDQRSSSTS SSSEFCSLVD ENKRLKQENG VLSSELTSMK  180
WKCKELLHLV ARYGDSAKKE EEDNERVPKL FGVRLEVAGE RERKRKRAEI SKNASVLLSQ  240
ACK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-23231124104Putative transcription factor
5d5x_B3e-23231124104Putative transcription factor
5d5x_E3e-23231124104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030436.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339449.11e-180PREDICTED: heat stress transcription factor B-3-like
SwissprotO222302e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A498IGF21e-168A0A498IGF2_MALDO; Uncharacterized protein
STRINGXP_009339449.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-66heat shock transcription factor B3