PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030412.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 457aa    MW: 51313.4 Da    PI: 7.0931
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030412.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.82.9e-16881641599
                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   l lp  f+++h  +  +++t+tledesgr++++k+i  k++    l++GW++F+ +++L egD++ F+l++ ++f  +v ++r+
  Pbr030412.1  88 SLGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIAYKTG----LSAGWRQFAASHNLLEGDVLAFQLVEPTKF--KVYIIRS 164
                  4789********644..678****************666665....9**********************9876666..9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.88774165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1979166IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-2083163No hitNo description
Gene3DG3DSA:2.40.330.101.2E-1783165IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1585165IPR003340B3 DNA binding domain
PfamPF023624.1E-1388164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MIQGKLKKPG KPKEQEVEYS MPMKELSNTQ ITKQMLSHAG KSLAISNTQY DFPVDGSLSR  60
GQAKSSAVIR AQEVRSKLEP QFPSFVKSLG LPSLFCKSHL PDKDITMTLE DESGRQYQLK  120
YIAYKTGLSA GWRQFAASHN LLEGDVLAFQ LVEPTKFKVY IIRSNGLAEV DGDLGLPNLD  180
NNTKQKDAGK FINLSVYKDN AETSTMPCND STKKRAETST TPWNDSNRKR AHSPQLVVPK  240
KKKIGLQQVK RSETDSEEVG SEVSEDLNSP AATLQFEDIR SYENFNILVD GLFLDPEFPE  300
DVRRKYYKLC RSQKAFLHEN VIKGMNHNLI IGAISETVNI ADSIKACKVT ALRDDFVSWD  360
KYLTAFELLG MNVGFLRERV CRLANLADDS EAAVEAKMYK EARIERSQAG IGIRNIEMKL  420
EELMEACDEF GAAIESLRSK AEINKLRFQE EVTAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227242RKRAHSPQLVVPKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030412.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375697.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498HUQ70.0A0A498HUQ7_MALDO; Uncharacterized protein
STRINGXP_009375697.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-28B3 family protein