PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr030137.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 331aa MW: 37130.9 Da PI: 7.9003

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr030137.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.2e-55	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPt+eel+++yL+kkv ++++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Pbr030137.1 17 LPPGFRFHPTNEELISHYLHKKVIDTSFSC-KAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 112 79**************************.88***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgek++Wvmheyrl Pbr030137.1 113 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRL 142 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-63	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.9	17	167	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MENVPAGIVE EDDQIDLPPG FRFHPTNEEL ISHYLHKKVI DTSFSCKAIG EVDLNKSEPW 60 ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLDGKFSVHN LPKTAKNEWV ICRVFEKNSG GKKTHFSGFV 180 SLGSLGNEIG PSGLPPLMDS SPYSAAKAKP ASESHYVPCF SNPDPTDVQG NQGNIVDYMN 240 NNTLFGFPCS NLLQDQSILR ALFENNAANM RQPSFKTERE MVSVSQETGL TSDMNTEISS 300 VMSNLNMARR PFGVQDPPAA AASLDNFWNY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	7	173	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	7	173	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	7	173	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	7	173	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	7	173	8	174	NAC domain-containing protein 19
3swm_B	1e-55	7	173	8	174	NAC domain-containing protein 19
3swm_C	1e-55	7	173	8	174	NAC domain-containing protein 19
3swm_D	1e-55	7	173	8	174	NAC domain-containing protein 19
3swp_A	1e-55	7	173	8	174	NAC domain-containing protein 19
3swp_B	1e-55	7	173	8	174	NAC domain-containing protein 19
3swp_C	1e-55	7	173	8	174	NAC domain-containing protein 19
3swp_D	1e-55	7	173	8	174	NAC domain-containing protein 19
4dul_A	1e-55	7	173	5	171	NAC domain-containing protein 19
4dul_B	1e-55	7	173	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr030137.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198120	0.0	KF198120.1 Malus hupehensis NAC domain protein (NAC57) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339146.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_018499055.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-144	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A498JR70	0.0	A0A498JR70_MALDO; Uncharacterized protein
TrEMBL	S5RDR9	0.0	S5RDR9_MALHU; NAC domain protein
STRING	XP_009339146.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-141	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]