PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20539.1 Da PI: 7.0158 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.5 | 1.7e-29 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratk..sgyWkatgkdkev 92 lp+GfrF Ptdeelv++yL +kv ++++++++ i+e+d y +P++L +++ +e+ew+fF++++++++ ++r+ r++ g+Wk g++ ++ Pbr030103.1 8 LPVGFRFMPTDEELVTHYLMNKVFHRPVPAAQEIREIDaagFYGGHPKNLV-TFSCGEREWFFFIHQSESSHAsQRRSIRVVGngLGFWKPNGSEDPI 104 79*************************888776777763337888*****6.777899***999998887765156677776634678********** PP NAM 93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++++g++ k +L+++ + + +++++t+W m ey l Pbr030103.1 105 CDEDGNAFASKISLTYFsrTSSLSRAKRTHWKMVEYYL 142 *****************5434678899*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-30 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.254 | 8 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-17 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MIINSDQLPV GFRFMPTDEE LVTHYLMNKV FHRPVPAAQE IREIDAAGFY GGHPKNLVTF 60 SCGEREWFFF IHQSESSHAS QRRSIRVVGN GLGFWKPNGS EDPICDEDGN AFASKISLTY 120 FSRTSSLSRA KRTHWKMVEY YLHEHDHVES NTEEKYQVQR REVVLCRMLR GTDYAGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-15 | 7 | 168 | 14 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030103.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021820730.1 | 7e-85 | NAC transcription factor 29-like | ||||
TrEMBL | A0A498I5K0 | 1e-103 | A0A498I5K0_MALDO; Uncharacterized protein | ||||
STRING | XP_004301123.1 | 4e-63 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-20 | NAC domain containing protein 90 |