PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 417aa MW: 46319.8 Da PI: 6.779 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl Pbr029249.1 14 RGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.3 | 1.5e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ m+ gRt++++k++w++ Pbr029249.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQMP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.417 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.20E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.593 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SIIAAQMPGR TDNDIKNYWN TRLKKKLLGR 120 QRKEHQLARK SGLVKQDTIK RSGGVGGNST NSHSAVPATD DQNPYWPELP VLAVPTVLPQ 180 QQQQPCFNDR ASLRKLLIKL GGRFGSDVNH NHETNQVIQG RPANIQPTYQ VLDDDNYSPY 240 AAAAATTQQM DEHYSGKNMQ SLLIPRCGIH ALNDSSPSLS NDVISPHQFA QTHYIVNTDN 300 IDGPGNGIMN NMFQGQGGNY ETDQLKEMVV YNNNDNQHRF DGLEFFCGEE MMVNNRITSS 360 YGESIGWGEM LGCPPVASSS DDYHDSMDRL IMPATPGQEC GFANDQLMSG YPGEAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029249.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337125.1 | 0.0 | PREDICTED: snRNA-activating protein complex subunit 4-like | ||||
TrEMBL | A0A498JBP4 | 0.0 | A0A498JBP4_MALDO; Uncharacterized protein | ||||
STRING | XP_009337125.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-79 | myb domain protein 84 |