PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bZIP | ||||||||
Protein Properties | Length: 153aa MW: 17641.2 Da PI: 10.2074 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.5 | 3.8e-15 | 64 | 118 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NRe+ArrsR RKk +e L+ +v+ L+ eN++Lk++l +++ l Pbr029239.1 64 RKRRRMMSNRESARRSRWRKKRHLEDLTSEVDRLKIENQELKNRLGLVAQNCHVL 118 6789*******************************************99999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-12 | 58 | 118 | No hit | No description |
SMART | SM00338 | 6.6E-14 | 60 | 124 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.082 | 62 | 108 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-13 | 64 | 119 | No hit | No description |
Pfam | PF00170 | 1.3E-12 | 64 | 118 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.52E-15 | 65 | 116 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 67 | 82 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MMKSSSVMPF IHEPAHMGRF KCPVQETVLT TAEIQELLSL LQAGNSASPS SEGSNREADT 60 VDERKRRRMM SNRESARRSR WRKKRHLEDL TSEVDRLKIE NQELKNRLGL VAQNCHVLWR 120 ENDRMTSESL ALRARLSDLY RILIAMQTQC SQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 67 | RKRRR |
2 | 65 | 84 | RRRMMSNRESARRSRWRKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029239.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350337.1 | 1e-109 | PREDICTED: bZIP transcription factor 2-like | ||||
Refseq | XP_009375134.1 | 1e-109 | PREDICTED: bZIP transcription factor 2-like | ||||
Swissprot | Q9LQ65 | 2e-26 | BZIP4_ARATH; Basic leucine zipper 4 | ||||
TrEMBL | A0A498J9Z7 | 2e-94 | A0A498J9Z7_MALDO; Uncharacterized protein | ||||
STRING | XP_009350337.1 | 1e-108 | (Pyrus x bretschneideri) | ||||
STRING | XP_009375134.1 | 1e-108 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5996 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59530.1 | 7e-29 | basic leucine-zipper 4 |
Publications ? help Back to Top | |||
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