PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028771.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 645aa    MW: 72650.9 Da    PI: 6.956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028771.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.41e-12556581126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++ G+C+yGd C+FaHg
  Pbr028771.1 556 FKTELCNKWQEVGECPYGDHCQFAHG 581
                  79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-5147IPR000315B-box-type zinc finger
CDDcd000214.33E-4547No hitNo description
PROSITE profilePS501199.1584388IPR000315B-box-type zinc finger
CDDcd000210.009014783No hitNo description
SMARTSM003360.514888IPR000315B-box-type zinc finger
Gene3DG3DSA:4.10.1000.104.9E-18550588IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-10552587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.417555583IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-8555582IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10556581IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-11589622IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7589623IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408593621IPR000571Zinc finger, CCCH-type
SMARTSM003560.042593620IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MKKSCDLCLD LRPVVYCEAD AARLCLSCDA KVHSANPIVD SHQRTLLCDS CKYRSADDQC  60
LDHRMFMCRV CDQSLHRHSS RPHQKRTIIS SYTGCPSAKE FAAFWGFKLN ENLSTSTGRN  120
AISSHGDGGK YQKSSCNSFI LDQILDLKKL QPSEENNPNS LLVSAHDQQS HDKRSSVHHH  180
NGATSSRKFE SNEELPFYTE SFWHCRSPVQ NSQLWSQNMQ DLGVCEEQTY DHADLNTPDV  240
DSIFRNFEES FGADQYVPYE GHARAKEIAS EIQNTAPLLN FRVKLKKLNR NFEKRCSQTT  300
TVEMQNDTSS TAYGGHTTSA MPQSPLKSQS SADDAVFASL YSAIFDRKPS VSRYDVEESD  360
HDSSSAHRHR QLYHSILVQD HQEMVNRHSR CLKHLQETSE EADALRRENV HLRSLNLELN  420
KHLSLLIHAS VQKKFGSPSS VRTTTPFGIV SGLGDMRTDD KRAEQDVSDE SPTSVIESEG  480
GDAENIDVER FSLPKSISVR SNGYVKAAHA AQAGASTATR TGSATTFNAS QKVFVPIGVK  540
EEEPPVELEV YNQGMFKTEL CNKWQEVGEC PYGDHCQFAH GIEELRPVIR HPRYKTDVCR  600
MMLSGVVCPY GHRCHFRHAL TENEKLMVPN KPGQRQFNLD RQNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-19556622470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028771.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356203.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
TrEMBLA0A498I8M50.0A0A498I8M5_MALDO; Uncharacterized protein
STRINGXP_009356203.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-70C3H family protein