PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028712.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 220aa    MW: 24766.1 Da    PI: 8.9477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028712.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.4e-2063117256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Pbr028712.1  63 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 117
                  78889************************************************98 PP
2HD-ZIP_I/II119.22.2e-3863151189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Pbr028712.1  63 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 151
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-1948113IPR009057Homeodomain-like
SuperFamilySSF466895.85E-2048120IPR009057Homeodomain-like
PROSITE profilePS5007117.37859119IPR001356Homeobox domain
SMARTSM003898.5E-1861123IPR001356Homeobox domain
CDDcd000866.98E-1762120No hitNo description
PfamPF000464.4E-1763117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
SMARTSM003401.5E-21119162IPR003106Leucine zipper, homeobox-associated
PfamPF021836.9E-10119153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGSSSLELTM SVPGFSSYPS FPNSSVRDLD INQIPSLQGD QEEWMTAGME DEEESSNGSG  60
PPRKKLRLTK EQSRLLEESF RQNHTLNPKQ KEALAMQLKL RPRQVEVWFQ NRRARSKLKQ  120
TEMECEYLKR WFGSLTEQNR RLQREVEELR AMKVSPPTVL YPHSCDPLPA STLTMCPRCE  180
RVTTTTTPDR DRGGGPTKTN NIPATAAPTL STKVATPAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028712.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339667.11e-161PREDICTED: homeobox-leucine zipper protein HOX3-like
RefseqXP_009356143.21e-161PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX18e-86HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-86HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A498I8H61e-144A0A498I8H6_MALDO; Mitogen-activated protein kinase
STRINGXP_009339667.11e-161(Pyrus x bretschneideri)
STRINGXP_009356143.11e-161(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-77homeobox-leucine zipper protein 17