PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 203aa MW: 21932.2 Da PI: 7.5558 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.5 | 1.4e-27 | 11 | 62 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +Y+eCl+NhAaslG++a+DGCgEf+ + ++++ +l+CaACgCHRnFHRr + Pbr028325.1 11 DVYRECLRNHAASLGSYATDGCGEFTLD---HASPGGLQCAACGCHRNFHRRVTY 62 58*************************8...5689*****************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.7E-23 | 12 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-22 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.709 | 13 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-16 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.41E-16 | 112 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 115 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-28 | 125 | 183 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEGDHDPNTN DVYRECLRNH AASLGSYATD GCGEFTLDHA SPGGLQCAAC GCHRNFHRRV 60 TYAATSSQAA GGGGSGHLQH HVIMSCSSRG RDPAENIITT QDQLIDYNAG GGGSPDSGER 120 MSSEKKRFRT KFTAEQKEKM LAFAEKLGWK LLRKDLEDEI ETFCRSVGVS RQVFKVWMHN 180 HKNLSSSSTS ASTGNASSLT SQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-22 | 126 | 188 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355979.1 | 1e-151 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A314UWY9 | 1e-108 | A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11 | ||||
STRING | XP_009355979.1 | 1e-150 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-39 | homeobox protein 22 |