PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028237.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 535aa MW: 60792.7 Da PI: 4.5163

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028237.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	122.3	5.7e-38	162	531	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + L ++ ea++ g+ +l + ++ l e ++p g+ p++Rla+ + ++ ++ ++++ ++ aa++lf++++P+ +f+h + Pbr028237.1 162 HMLKAFGEAMEMGQRKLEEVIMRCLLEKVNPLGQplePLERLAFNLCQGVVDNQQG-----------DYLKQESCKNYEAAFNLFYQIFPFGRFAHYA 248 55666666666666666666666666666666642335556666666655555444...........3333334566778999************* PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak.rle 187 aN aIleav ++ e+vH++ fdi++G+Q +++a a+R++ l++T+++ ++ + + eet+++L++ A+++g++++ + ++ + ++ Pbr028237.1 249 ANTAILEAVPEDvETVHVVEFDIGEGVQLSQMIEAVAKRNKT---LKVTAIKWDVEEsdevapPHWRFEETKRQLQHHARSFGLNLKVEEIAIEdLVS 343 *****9999**********************765...**976555668899999********************96661445 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklpre 278 ++ + r ++E la n+++ l ++ + ++ e+L+l k+l ++ ++++ + + a++ n++ F f + +y al+ sle+++p++ Pbr028237.1 344 LIKKANKRGGRREFLAFNSMVGLPHMR--RRRSRGLLMEFLRLAKDLLANsargIITFGDGDacAKReNDSGFSSFFDANVVHYEALLGSLESSFPSH 439 55555666666**********97..4444445799****87655669*99765668************************99 PP GRAS 279 s.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374 e+r+++E +++++ +++ e+ + + ++l+ W +G++ ++s k+ ++ak ++ +s g rv e+ ++++l W++ pL+ v W+ Pbr028237.1 440 LgEARMVMELMFVAPYVSSQAWFEKWNEAREGRNLHPW------FGLEGRRVSRKMLMEAKEIVGADGSYGVRVGgENGNEMTLEWNSIPLIRVETWT 531 9899***********9999999977777778888......8*************************967778888*********9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.701	134	510	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-35	162	531	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MMQSEMKFQT FWPCLNETNS TLDTNEYTEQ MGSSEFSSIF MPSDEFSETS GSFPFSTMFS 60 GEFEQLADCD PLLQATWMAE EEFPLELGGF ETNYLMGEIE NMYASDCDQL PSPQFFVEGN 120 GVWSPNSFVT SEASSMDVTS VQQSITLPRD EMEINNEVRI RHMLKAFGEA MEMGQRKLEE 180 VIMRCLLEKV NPLGQPLEPL ERLAFNLCQG VVDNQQGDYL KQESCKNYEA AFNLFYQIFP 240 FGRFAHYAAN TAILEAVPED VETVHVVEFD IGEGVQLSQM IEAVAKRNKT LKVTAIKWDV 300 EESDEVAPPH WRFEETKRQL QHHARSFGLN LKVEEIAIED LVSLIKKANK RGGRREFLAF 360 NSMVGLPHMR RRRSRGLLME FLRLAKDLLA NSARGIITFG DGDACAKREN DSGFSSFFDA 420 NVVHYEALLG SLESSFPSHL GEARMVMELM FVAPYVSSQA WFEKWNEARE GRNLHPWFGL 480 EGRRVSRKML MEAKEIVGAD GSYGVRVGGE NGNEMTLEWN SIPLIRVETW TNRS*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MMQSEMKFQT FWPCLNETNS TLDTNEYTEQ MGSSEFSSIF MPSDEFSETS GSFPFSTMFS  60
GEFEQLADCD PLLQATWMAE EEFPLELGGF ETNYLMGEIE NMYASDCDQL PSPQFFVEGN  120
GVWSPNSFVT SEASSMDVTS VQQSITLPRD EMEINNEVRI RHMLKAFGEA MEMGQRKLEE  180
VIMRCLLEKV NPLGQPLEPL ERLAFNLCQG VVDNQQGDYL KQESCKNYEA AFNLFYQIFP  240
FGRFAHYAAN TAILEAVPED VETVHVVEFD IGEGVQLSQM IEAVAKRNKT LKVTAIKWDV  300
EESDEVAPPH WRFEETKRQL QHHARSFGLN LKVEEIAIED LVSLIKKANK RGGRREFLAF  360
NSMVGLPHMR RRRSRGLLME FLRLAKDLLA NSARGIITFG DGDACAKREN DSGFSSFFDA  420
NVVHYEALLG SLESSFPSHL GEARMVMELM FVAPYVSSQA WFEKWNEARE GRNLHPWFGL  480
EGRRVSRKML MEAKEIVGAD GSYGVRVGGE NGNEMTLEWN SIPLIRVETW TNRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028237.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009337756.2	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A498IEP8	0.0	A0A498IEP8_MALDO; Uncharacterized protein
STRING	XP_009337756.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-16	GRAS family protein