PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 535aa MW: 60412.8 Da PI: 4.3773 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 136.2 | 3.4e-42 | 165 | 531 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL ++ ea++ g+ el + ++ l e ++p g++++Rla+y+ ++ ++ + l+ ++ + ++ aa++lf++++P+ +f+h +aN Pbr028236.1 165 RHLLKAFGEAMEMGQRELEEVIMRCLVEKVNPLGQSLERLAFYLCQGVVDNQQG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYAAN 251 7999999****************************************9988887......2222..22...356777899****************** PP GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.vakrledl 189 aIleav ++ e+vH++ fdi++G+Q L++a a+R++ l +T+++ +++ + + eet+++L++ A+++gv+++ + + +++ ++++ Pbr028236.1 252 TAILEAVPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LEVTAIKWDAEEsdvvapPQWRFEETKRQLQHHARSFGVNLKVEEIeIEDLVSEI 346 *******9999**************************765...9*****986666779999999************************9333355556 PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres. 279 + + r ++E la n+++ l ++ + + e+L+l k+l ++ ++++ + + +++ n++sF f + +y al++s+e+++p + Pbr028236.1 347 KKANKRGGRREFLAFNSMVGLPHMR--RRRRRGLLMEFLRLAKDLLANsargIITFGDGDacVKRgNDSSFNSSFDANVVHYKALLESIESSFPIHLg 442 665656666**************98..4444556799********87655669******9665668****************************9998 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+ri++E +++++ +++ e+ + + +l+ W +G++ ++s ++ +ak ++ +s g r e+ + ++l W++ pLv v W+ Pbr028236.1 443 EARIVMELMFVAPYVSSHAWFEKWNEAREGGNLQPW------FGLEGRRVSREMLIEAKEIVGADSSYGVRGGENGNDMTLEWNSTPLVRVETWT 531 9************************88888899999......8***********************9************************9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.035 | 138 | 511 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-39 | 165 | 531 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MMQSEMNFQT LWPYLNVTNS ALDTNEYTEQ MGSSEFSSIF MASDEFSETS FPFSTTFSGE 60 FEQLADCDNL LQVTSMAVEE FPMELGGFET NYLIGEIENM YASCLEGSEG SNTLPSQQFS 120 GEGNDEWSPN SFAISEASSM DVTSVQQSIT LPRDEMEIDN KVSIRHLLKA FGEAMEMGQR 180 ELEEVIMRCL VEKVNPLGQS LERLAFYLCQ GVVDNQQGDY LKQESCKNFE AAFNLFYQIF 240 PFGRFAHYAA NTAILEAVPE DVETVHVVEF DIGEGVQLSQ LIEAVAKRNK TLEVTAIKWD 300 AEESDVVAPP QWRFEETKRQ LQHHARSFGV NLKVEEIEIE DLVSEIKKAN KRGGRREFLA 360 FNSMVGLPHM RRRRRRGLLM EFLRLAKDLL ANSARGIITF GDGDACVKRG NDSSFNSSFD 420 ANVVHYKALL ESIESSFPIH LGEARIVMEL MFVAPYVSSH AWFEKWNEAR EGGNLQPWFG 480 LEGRRVSREM LIEAKEIVGA DSSYGVRGGE NGNDMTLEWN STPLVRVETW TNRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-13 | 198 | 530 | 37 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 370 | 375 | RRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028236.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337755.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A498IE33 | 0.0 | A0A498IE33_MALDO; Uncharacterized protein | ||||
STRING | XP_009337755.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4274 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-15 | GRAS family protein |