PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027468.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 524aa MW: 58538.5 Da PI: 6.4325

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027468.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7e-10	237	276	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le+ L++ ++ Pbr027468.1 237 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQE 276 788*************************976666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-8	233	304	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.427	235	279	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.03E-7	237	280	No hit	No description
CDD	cd14708	1.98E-24	237	288	No hit	No description
Pfam	PF00170	1.9E-6	237	276	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.8E-7	238	281	No hit	No description
PROSITE pattern	PS00036	0	240	255	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	322	395	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MQSFKAASTN PEFYSHSSFY FRGDDSDRNQ TRFTDLGELE QSATAFPHDD VVVLSPSSMF 60 SLKANNVGGV PDSLQYGTLN VGGCLDIGST ITGTGGGGCV DTGQQQPYMY QQQKGTTSSG 120 NGHFENWGDN SAMADNSQQT DTSTDVDTDD KNHVSPSLSW SLFHEHMCLL DCYHTFSWES 180 FYRPGGIENL LKFGIWITIH VSSFKTFVPS LHGVQHGALM VVDSTEQAKE RTTGDQKTLR 240 RLAQNREAAR KSRLRKKAYV QQLENSRLRL SQLEQELQRA RQQGIYIADG LPGDHGHSVA 300 GNGALTFNLE YARWLEEHQR LIHEMRSAVN SHMGDNELRI LVDSVMTHYD EIFRLKSIAA 360 KIDVFHMLSG MWKTPAERCF MWLGGFRSSE LLKILGNHLE PLTDQQLMGI CNLQQSSQQA 420 EDALSQGMEA LQQSLVETLS SPSHCPTGSD NVADYMGQMA IAMGKLATLE NFLHQADLLR 480 QQTLQQLHRI LTTRQAARAL LVISEHFSRL RALSSLWQAR PRD*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MQSFKAASTN PEFYSHSSFY FRGDDSDRNQ TRFTDLGELE QSATAFPHDD VVVLSPSSMF  60
SLKANNVGGV PDSLQYGTLN VGGCLDIGST ITGTGGGGCV DTGQQQPYMY QQQKGTTSSG  120
NGHFENWGDN SAMADNSQQT DTSTDVDTDD KNHVSPSLSW SLFHEHMCLL DCYHTFSWES  180
FYRPGGIENL LKFGIWITIH VSSFKTFVPS LHGVQHGALM VVDSTEQAKE RTTGDQKTLR  240
RLAQNREAAR KSRLRKKAYV QQLENSRLRL SQLEQELQRA RQQGIYIADG LPGDHGHSVA  300
GNGALTFNLE YARWLEEHQR LIHEMRSAVN SHMGDNELRI LVDSVMTHYD EIFRLKSIAA  360
KIDVFHMLSG MWKTPAERCF MWLGGFRSSE LLKILGNHLE PLTDQQLMGI CNLQQSSQQA  420
EDALSQGMEA LQQSLVETLS SPSHCPTGSD NVADYMGQMA IAMGKLATLE NFLHQADLLR  480
QQTLQQLHRI LTTRQAARAL LVISEHFSRL RALSSLWQAR PRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027468.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336601.1	0.0	PREDICTED: transcription factor TGA2.3-like isoform X1
Swissprot	Q9SX27	1e-159	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A2P5ENB3	0.0	A0A2P5ENB3_TREOI; Basic-leucine zipper transcription factor
STRING	XP_009336601.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-141	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]