PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027423.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 187aa    MW: 20692.1 Da    PI: 6.6699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027423.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-183181155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Pbr027423.1 31 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 81
                 68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-123181IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-213290IPR016177DNA-binding domain
PROSITE profilePS5103223.5783289IPR001471AP2/ERF domain
SMARTSM003808.9E-363295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-313290IPR001471AP2/ERF domain
PRINTSPR003671.3E-123344IPR001471AP2/ERF domain
CDDcd000181.30E-293391No hitNo description
PRINTSPR003671.3E-127191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQPPYIEDD PSTTIINTQK ANSQGGGTRH PVYRGVRKRR WGKWVSEIRE PRKKSRIWLG  60
SFPVPEMAAK AYDVAAYCLK GRKAQLNFPE DVDHLPRPST STARDIQAAA AQAARRVMKS  120
SHITKKNDDD DDHHGGLDGG DDFWGEIELP ELMNNSGCYW NSCGWNMTAF SGDAAGVAWP  180
EGEACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-182493676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027423.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324571e-173GU732457.1 Malus x domestica AP2 domain class transcription factor (AP2D33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375406.11e-139PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI27e-60ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A498KMP21e-108A0A498KMP2_MALDO; Uncharacterized protein
STRINGXP_009336760.11e-138(Pyrus x bretschneideri)
STRINGXP_009375406.11e-138(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]