PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026075.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24580.4 Da    PI: 9.6176
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026075.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.44.9e-151052244
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +ien+s r+ tf kRr+g +KK +E+  LCd+  + ii+s+++
  Pbr026075.1 10 FIENDSSRKATFRKRRTGFMKKMYEINKLCDVPTCAIIYSPDQ 52
                 8***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.128149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-16160IPR002100Transcription factor, MADS-box
CDDcd002664.07E-25284No hitNo description
SuperFamilySSF554553.14E-21395IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-161052IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTKRKLKLAF IENDSSRKAT FRKRRTGFMK KMYEINKLCD VPTCAIIYSP DQPQPDVWPD  60
PSEVRRLIEL FKNVPEKERN KKMVTHGMFL KQRIEKEQEK LNKLKKENRE KELRMAMSQC  120
LAGKPLNGLD FTNLQEMGWM IDEKLKDIAV TKSRKENELA EINQPLVGQP PAHATSADEN  180
TQDAIQLAPW SVGGVRSSKF GEVDDQIMPL GDY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224KRKLKLAFIENDSSRKATFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026075.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335562.11e-158PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_009365496.11e-158PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A498IJ481e-145A0A498IJ48_MALDO; Uncharacterized protein
STRINGXP_009335562.11e-158(Pyrus x bretschneideri)
STRINGXP_009365496.11e-158(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2768823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-26AGAMOUS-like 80