PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21882.5 Da PI: 9.901 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.3 | 5.4e-10 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i n+s r t+ k r g +KK +E+ LC++ + i++s++ Pbr026073.1 10 FIINNSSRRATLRKMRRGFMKKMYEINKLCEVPTCAIMYSPDE 52 6778899999******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.101 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-18 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.36E-23 | 2 | 84 | No hit | No description |
PRINTS | PR00404 | 5.7E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-9 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTRRKVKLAF IINNSSRRAT LRKMRRGFMK KMYEINKLCE VPTCAIMYSP DESQPDFWPD 60 SSGVQRLIEQ FKNMPEGEQN KKMVTHEMLL KQRIKKEQEK LNKLKKENRE RQIRMLMNQC 120 LTGKPLTGLD FNDLEDMGSM INETLKDIVA KIKSRKEEEL VEMDQPSVAQ PPMRASVTDE 180 NFHDTI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026073.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335560.2 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A498IJ48 | 4e-86 | A0A498IJ48_MALDO; Uncharacterized protein | ||||
STRING | XP_009335560.1 | 1e-135 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-36 | AGAMOUS-like 80 |