PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025990.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 199aa    MW: 22075 Da    PI: 7.234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025990.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-1689139255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r +lg + t+ +A  a+++a+ kl+g
  Pbr025990.1  89 HYRGVRRRP-WGKYAAEIRDPAKNG--ARLWLGIYETPVDAGLAYDRAAFKLRG 139
                  8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-2888148IPR001471AP2/ERF domain
CDDcd000185.60E-2688149No hitNo description
PfamPF008472.1E-1089139IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2189148IPR016177DNA-binding domain
SMARTSM003808.8E-3389153IPR001471AP2/ERF domain
PROSITE profilePS5103221.99789147IPR001471AP2/ERF domain
PRINTSPR003673.2E-1390101IPR001471AP2/ERF domain
PRINTSPR003673.2E-13129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MYGQETLELE SDDFALLESI HQHLDDLEPR AMSVSPNNVP VIFPVLTTED WWESLFVVTD  60
HDAQAAFGGL HGAVKNEAAV AREVYAVKHY RGVRRRPWGK YAAEIRDPAK NGARLWLGIY  120
ETPVDAGLAY DRAAFKLRGC KAKLNFPHLI GSSSIEPVRV TPKRRRSPDH SSALASTSDG  180
YETQMPKRIK AGIEYLAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2988153469ATERF1
3gcc_A1e-2988153469ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025990.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960702.17e-99ethylene-responsive transcription factor 13-like
TrEMBLA0A498JC645e-91A0A498JC64_MALDO; Uncharacterized protein
STRINGXP_009335609.11e-145(Pyrus x bretschneideri)
STRINGXP_009335623.11e-145(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-43ethylene-responsive element binding factor 13