PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 25806.9 Da PI: 8.4755 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.1 | 1.1e-23 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en +qvtfskRr+gi+KKA ELSvLC+a+vavi+fs+ gk++ y Pbr025970.1 21 KLENLNSKQVTFSKRRAGIFKKAAELSVLCGADVAVIVFSTAGKVFCY 68 5689999*************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-33 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.983 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.32E-35 | 13 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-27 | 13 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-22 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-22 | 22 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-22 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-22 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVLLKNLPKK TQGRKRIEIK KLENLNSKQV TFSKRRAGIF KKAAELSVLC GADVAVIVFS 60 TAGKVFCYGH PSVDTILDWY CSGVTPPAVS DDTAGDKSPN RVPVAEFNKE YMEAIRELEE 120 QKKRVAEVKE AAKMKKVVMG VVGGCGERFW WEDESVDLDA LDVQEVEHYL IALEDVRKQV 180 AARLHEMKIL NGTLNPGALP PIPAVHRLCH LPMMTNGFSG HGGQFGGGYH GFGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 1e-15 | 13 | 93 | 1 | 81 | Myocyte-specific enhancer factor 2B |
1n6j_B | 1e-15 | 13 | 93 | 1 | 81 | Myocyte-specific enhancer factor 2B |
1tqe_P | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6byy_A | 1e-15 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6byy_B | 1e-15 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6byy_C | 1e-15 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6byy_D | 1e-15 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 13 | 94 | 2 | 83 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 13 | 94 | 2 | 83 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 13 | 94 | 2 | 83 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 13 | 94 | 2 | 83 | MEF2 CHIMERA |
6c9l_A | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-15 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025970.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335453.1 | 1e-175 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_009335460.1 | 1e-175 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A498KGD9 | 1e-154 | A0A498KGD9_MALDO; Uncharacterized protein | ||||
STRING | XP_009335453.1 | 1e-174 | (Pyrus x bretschneideri) | ||||
STRING | XP_009335460.1 | 1e-174 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 7e-28 | AGAMOUS-like 23 |