PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025860.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 323aa    MW: 36782.6 Da    PI: 9.1889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025860.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.25.9e-302171151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien s rqvtfskRrng+lKKA+ELSvLCdaevavi+fsstgklye+ss
  Pbr025860.1 21 KKIENLSSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSSTGKLYEFSS 71
                 68***********************************************96 PP
2K-box50.77.7e-189518312100
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   +a +++ +l+ L++ei +L+ +  ++ G++L+  slk+Lq+Le+qL +++  +++kK+e+l+e++++++ +e+++ ee ++Lrk+lee
  Pbr025860.1  95 MQATNSNCNLNALQNEIATLRLTCTRMTGKELDGVSLKDLQRLEDQLSEGILCVKDKKEEILMEKLKKSRLQEQKAMEESENLRKELEE 183
                  56678888999**********999**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.4781373IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-401372IPR002100Transcription factor, MADS-box
CDDcd002652.48E-381490No hitNo description
SuperFamilySSF554553.53E-291475IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-291535IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001569IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262269IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-293550IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-295071IPR002100Transcription factor, MADS-box
PfamPF014867.0E-1397181IPR002487Transcription factor, K-box
PROSITE profilePS5129711.06697187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNTENSTPAR KPLGRGRIEI KKIENLSSRQ VTFSKRRNGL LKKAKELSVL CDAEVAVIVF  60
SSTGKLYEFS STRYNKGALI EHPQKERSGD NEPVMQATNS NCNLNALQNE IATLRLTCTR  120
MTGKELDGVS LKDLQRLEDQ LSEGILCVKD KKEEILMEKL KKSRLQEQKA MEESENLRKE  180
LEEMRQNKRS NWPIVVASHP LERRFSCTSS KAVSSYKAEE SDHSDTSLHL GLSSDVHRKR  240
KAAKIEHNSN DSGRNNCPTT EWRSWEDVPG NVKKVVMDEL LCKYTLDNHT NEQLTKSMDD  300
ALERGYNRWR YEVLRNGPGP SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-191399189MEF2C
5f28_B5e-191399189MEF2C
5f28_C5e-191399189MEF2C
5f28_D5e-191399189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025860.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640100.0KP164010.1 Pyrus pyrifolia clone PpAGL18 AGL18 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335207.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X1
SwissprotQ9M2K83e-57AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A498I3961e-179A0A498I396_MALDO; Uncharacterized protein
STRINGXP_009335207.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-47AGAMOUS-like 18