PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025725.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 450aa    MW: 51084.3 Da    PI: 6.6955
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025725.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.31.3e-20122218185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt++ v++Li+++  ++++ +++            +kk++W+  s+ m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d +
  Pbr025725.1 122 KWTDNVVRLLIDVVACVGDDGSDEGgeglkrksgilQKKGKWKTLSQIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDAM 218
                  7**************888888875335666778888**********************************************569999998888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-18120245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDSSGLGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH HQHHMNVMGG GGIAGDCHPI  60
GLVEVKGSVP KVGSTIAKGK AVASFNGNNG YNLSDDDEQN YTDDESIEGA KGKKGSRWQR  120
MKWTDNVVRL LIDVVACVGD DGSDEGGEGL KRKSGILQKK GKWKTLSQIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDAMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCQELNP HGYSLPLGRC SKDINGSEEE EAEENHDSED DKLDNEDHNN  300
ADNDRERMRR MSERKKAREE DGHMWPQHVP LDSFEVEVGD CFQDATKSLW ERRDWIKKQK  360
LQLEEQRVSF HAEALEIEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RRVLQLRQKE  420
VELDLRRSEA SLEPSSLGLG RDHIDLGRH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304315RERMRRMSERKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355179.10.0PREDICTED: myb/SANT-like DNA-binding domain-containing protein 4
TrEMBLA0A498IKR00.0A0A498IKR0_MALDO; Uncharacterized protein
STRINGXP_009355179.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-61sequence-specific DNA binding transcription factors