PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr025329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 22960.8 Da PI: 6.0308 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Pbr025329.1 36 YECVFCKRGFTTAQALGGHMNIH 58 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.33E-6 | 34 | 63 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 34 | 62 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MESNHPDHQD SKTSSTDEEA EHRRDVNDDM GTGRSYECVF CKRGFTTAQA LGGHMNIHRR 60 ERAKTRPSSD PTNLASSTSK AVEDQSNPRA AVYHAIQSYP PHYFIAPPDD HMNYRTYVPA 120 PNTSGVLRPP HANHISDEDL CARNYFPRHR NLLRDDHQDW RSGSSSSLGM GRPSDDYKER 180 VFNGGSEEAD DELDLELRLG HDP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr025329.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ418474 | 0.0 | HQ418474.1 Malus x domestica transcriptional regulator superman (SUP9b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354919.1 | 1e-151 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A498JRA7 | 1e-145 | A0A498JRA7_MALDO; Uncharacterized protein | ||||
STRING | XP_009354919.1 | 1e-150 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-13 | C2H2 family protein |