PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025285.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 302aa    MW: 31903.1 Da    PI: 6.0472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025285.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09150194554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + ++Y+k L
  Pbr025285.1 150 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 194
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-15143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.783145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MANNPSEPQA DDFLEQILGL PNFASGDANL AGSDGGLAGG QVSPASMMLQ LNPVDGSGHI  60
GGGVGCGGGF QGGVFPLGLS LEQGKAGFLK HEEASGSGKR FRDDVVDSRV SSVKNVFHGQ  120
PISNTIAAAP HPPAMRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR  180
AAMLDEIMDY VKFLRLQVKV LSMSRLGGAG AVAPLVTDIP LSSVEEEGSE GGRNQPAWDK  240
WSNDGTERQV AKLMEDNVGA AMQFLQSKAL CIMPISLASA IYNTQPPDTS TVVKPEMNPP  300
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025285.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354865.10.0PREDICTED: transcription factor UNE12
RefseqXP_009354866.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-127UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A498JQY80.0A0A498JQY8_MALDO; Uncharacterized protein
STRINGXP_009354865.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.26e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]