PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024974.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 278aa MW: 31198.4 Da PI: 4.8479

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024974.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.1	4.8e-28	89	172	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++ev aLi +r+++e+++ + +k++ Weevs+ m++ g+++s+ +Ck+kwen+nk+++k+k+ +kkr + +s+tc+yf+ql Pbr024974.1 89 RWPQNEVEALILVRSSVESKFAELGSKGHVWEEVSALMASMGYQKSARRCKQKWENINKYFRKTKDAAKKR-PLKSKTCSYFSQL 172 8*******************************************************************8.9********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.597	82	146	IPR017877	Myb-like domain
Pfam	PF13837	3.9E-20	88	174	No hit	No description
CDD	cd12203	1.09E-22	88	153	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDKERREREE AWRCQAEENH KREAMGKLHE QAIASSREAL IVSYIEKITG QRVNLPPREI 60 PLLLQPDNSS EPETAEELTH SKADNANSRW PQNEVEALIL VRSSVESKFA ELGSKGHVWE 120 EVSALMASMG YQKSARRCKQ KWENINKYFR KTKDAAKKRP LKSKTCSYFS QLGQLYSKTP 180 TVPSSSSSVS MDVSIQRQGC SELLEAFIAG TETGVTHNLP NGNFEISEKG SSRLDFNGIG 240 DGKVEHVQGD SGKEKENDED DENMDEREEI DGDDSDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024974.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009334681.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A498J745	1e-163	A0A498J745_MALDO; Uncharacterized protein
STRING	XP_009334681.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13998	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-41	Trihelix family protein