PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024263.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 353aa    MW: 39052 Da    PI: 6.4238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024263.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12172218455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +Er+RR+++ ++f  L  llP +     kK +Ka++L  A++Y+k+Lq
  Pbr024263.1 172 DHVLAERKRRENLSQRFIALSALLPGL-----KKTDKASVLGDAIKYVKHLQ 218
                  58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16173232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-12173222No hitNo description
PfamPF000106.7E-10173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEDPTFINQY EMSFLDYSLD ELNFQSFSSE SYSSYPNFTP KADNFSKASI ENLHQMSGTH  60
ERPAKQPKNN TSSWNSCSTD HIITANASSS SSSHLISFEN CNSSPPTTSQ QYYGLDCRVI  120
KPKNEVEYSN GKLNPPALIS QGIYDPQTCS PKHGQGIKRA ATVTRSPLDA QDHVLAERKR  180
RENLSQRFIA LSALLPGLKK TDKASVLGDA IKYVKHLQEL TKMLEKQAAK KTVEAVVFVK  240
RTQYSADDDI SSSDENSESC SNQPLPEIEA RVSDKEVLIR IHSEKTKGCL ASILSEIEKL  300
DLTIVHSCAL PLGNSTLDIT VVAQMDVEFS MTVKDLVKNL RQALLKLVGP EI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024263.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354635.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_009354636.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A498HVP70.0A0A498HVP7_MALDO; Uncharacterized protein
STRINGXP_009354635.10.0(Pyrus x bretschneideri)
STRINGXP_009354636.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-55bHLH family protein