PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr024262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 39052 Da PI: 6.4238 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 172 | 218 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK +Ka++L A++Y+k+Lq Pbr024262.1 172 DHVLAERKRRENLSQRFIALSALLPGL-----KKTDKASVLGDAIKYVKHLQ 218 58899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.04 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-15 | 172 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-16 | 173 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-12 | 173 | 222 | No hit | No description |
Pfam | PF00010 | 6.7E-10 | 173 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-14 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEDPTFINQY EMSFLDYSLD ELNFQSFSSE SYSSYPNFTP KADNFSKASI ENLHQMSGTH 60 ERPAKQPKNN TSSWNSCSTD HIITANASSS SSSHLISFEN CNSSPPTTSQ QYYGLDCRVI 120 KPKNEVEYSN GKLNPPALIS QGIYDPQTCS PKHGQGIKRA ATVTRSPLDA QDHVLAERKR 180 RENLSQRFIA LSALLPGLKK TDKASVLGDA IKYVKHLQEL TKMLEKQAAK KTVEAVVFVK 240 RTQYSADDDI SSSDENSESC SNQPLPEIEA RVSDKEVLIR IHSEKTKGCL ASILSEIEKL 300 DLTIVHSCAL PLGNSTLDIT VVAQMDVEFS MTVKDLVKNL RQALLKLVGP EI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr024262.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354635.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_009354636.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A498HVP7 | 0.0 | A0A498HVP7_MALDO; Uncharacterized protein | ||||
STRING | XP_009354635.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009354636.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 2e-55 | bHLH family protein |